Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0193
         (334 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   8.8  
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    26   8.8  

>SB_25925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 132 NIRCVSEVRTSS*AEHNCRETTVFNIFRNYLKQ 230
           N+ C +    +S + HN R++T+ N+ R+ +KQ
Sbjct: 107 NVNCFANRGMTSISSHNLRDSTMRNLIRDEVKQ 139


>SB_41501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 748

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 212 KNIKYGCFSTIVFCSAACA 156
           ++I++GCF  +V+ S  CA
Sbjct: 664 QSIRWGCFCVLVYVSIGCA 682


>SB_29101| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 350

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 1  EIVYFTCSVVCVCVYSIAFNINLMTLKYR 87
          E +    +VVC+CV SI  N +L  + Y+
Sbjct: 6  ETIVEALTVVCICVISILGNGSLFIIVYK 34


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 265  SRADHTSEISGFCFK*FLKILNTVVSLQLCSAQLLVRTSETHLMFMRLYN 116
            +  D     S FCF  FLK ++ ++ ++   A+ +V     H  F + YN
Sbjct: 936  TEVDTRRRASVFCFPAFLKSIDKLIDIR---AKAIVDLFSCHFYFKKPYN 982


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = -1

Query: 208 ILNTVVSLQLCSAQLLVRTSETHLMFMRLYNLISLLIQFCIYI 80
           +L     L +C A L +  +   +++  +  +I+L +QFC+ +
Sbjct: 86  LLTVAAPLPVCCALLSIYVTRPEVLYDIVVMVITLPLQFCVIV 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,431
Number of Sequences: 59808
Number of extensions: 103657
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)