Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0193
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   9.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 39  THTYDRACEIN 7
           T+TYD  C++N
Sbjct: 500 TYTYDTICQLN 510


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -1

Query: 136 MFMRLYNLISLLI 98
           +FMR++NLI +++
Sbjct: 275 VFMRIFNLICMML 287


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -1

Query: 136 MFMRLYNLISLLI 98
           +FMR++NLI +++
Sbjct: 243 VFMRIFNLICMML 255


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 181 IVEKQPYLIFLE 216
           ++EK+PY+I L+
Sbjct: 461 VLEKEPYVIILD 472


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 314 IIYNNSRNTSMR 279
           IIYNNS N+  R
Sbjct: 212 IIYNNSDNSFQR 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,117
Number of Sequences: 438
Number of extensions: 1214
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)