Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0192
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)           100   2e-21
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               97   9e-21
SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)          65   4e-11
SB_55654| Best HMM Match : Toxin_7 (HMM E-Value=9.7)                   50   1e-06
SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
 Frame = +3

Query: 72   STVIEGSMKIHAQYHYTMETQTSVATPTEDGLEIYSSTQWLDLTNIAIAKCLDMP----- 236
            S V+ G +   AQ+H+ METQ ++  P EDG+ I+ ++Q  DL   A+ K L MP     
Sbjct: 1354 SHVVTGEVSCGAQHHFHMETQVALTVPGEDGITIFCASQGTDLIQSAVCKVLGMPAKKDH 1413

Query: 237  -----------VNSINIIVRRLGGGYGSKITRASQIACAAALVTRFLGRTCRFILPLQTN 383
                       V S++++ RR GG +G+K TRA+ IACA+AL  + L R  R  +    N
Sbjct: 1414 TPNQSPIFVCPVCSVDVVTRRCGGAFGAKATRAAPIACASALAAKILDRPVRLKMNFNKN 1473

Query: 384  MKAIGKRIPTNCEFEIGVNKAGRIQNLKNTFYQDGGCS 497
            +++IG R P   +++   N  G +Q +   +Y + GC+
Sbjct: 1474 LESIGGRSPYLLKYKAAFNDDGVLQAVDMDYYINTGCT 1511


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
 Frame = +3

Query: 78  VIEGSMKIHAQYHYTMETQTSVATPT-EDG-LEIYSSTQWLDLTNIAIAKCLDMPVNSIN 251
           VIEG M+  AQ H+ +ET  ++A P  EDG +E++ STQ    T   +A  L +  N I 
Sbjct: 169 VIEGEMRTGAQEHFYLETHATIAVPKGEDGEMELFCSTQNPTTTQSMVAAVLGVQRNRIV 228

Query: 252 IIVRRLGGGYGSKITRASQIACAAALVTRFLGRTCRFILPLQTNMKAIGKRIPTNCEFEI 431
           + V+R+GGG+G K TR+  ++   A+     G+  R +L    +MK  G R P    +++
Sbjct: 229 VRVKRMGGGFGGKETRSCWLSAVVAVAASRTGKPVRCMLDRDEDMKTGGTRHPFLARYKV 288

Query: 432 GVNKAGRIQNLKNTFYQDGGCS--FNEVLTPLTVKHFQNCY 548
           G  K GRIQ L    Y + G S   +  +    V H +NCY
Sbjct: 289 GFTKDGRIQALDIQLYNNAGHSLDLSRAVMERAVCHSENCY 329


>SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)
          Length = 274

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 30/97 (30%), Positives = 55/97 (56%)
 Frame = +3

Query: 213 IAKCLDMPVNSINIIVRRLGGGYGSKITRASQIACAAALVTRFLGRTCRFILPLQTNMKA 392
           +A+ L +P++ + I  +R+GG +G K+T  S IA   A+V +  GR  R  L    ++K 
Sbjct: 174 VARNLGVPLSKVVIRTKRVGGAFGGKLTNGSAIAATVAVVAQKSGRAARLALSQTEDIKT 233

Query: 393 IGKRIPTNCEFEIGVNKAGRIQNLKNTFYQDGGCSFN 503
            GKR     ++++G    G++Q L+  +Y +GG + +
Sbjct: 234 TGKRGDYLVKYKVGFTDEGKLQALEAVYYGNGGSALD 270


>SB_55654| Best HMM Match : Toxin_7 (HMM E-Value=9.7)
          Length = 194

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +3

Query: 309 IACAAALVTRFLGRTCRFILPLQTNMKAIGKRIPTNCEFEIGVNKAGRIQNLKNTFYQDG 488
           +  A  L +    R  R ++   TNMK +GKR P   ++++G + +G ++ +  T Y D 
Sbjct: 41  VPLAPPLTSILRTRPVRMMMNFNTNMKMVGKRTPYLVKYKVGTDDSGTLKGIDMTMYADY 100

Query: 489 GCSFNEVLTPLTVKHFQNCY 548
           GCS N+     T     N Y
Sbjct: 101 GCSVNDSDMGSTYNFCDNAY 120


>SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 316 QAI*LARVILLPYPPPNRRTMMLILLTGISKHFAIAML 203
           +AI   R++  P+PPP  +    + L  +S+H  +  L
Sbjct: 23  KAICCGRMVECPFPPPGSKASHKVKLIDVSRHIKVCPL 60


>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1296

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 51  TDSGSDIS----TVIEGSMKIHAQYHYTMETQTSVATPTEDGLEIYSST 185
           T +G D S    T    ++    ++H T ET+TS    T+ GL   +ST
Sbjct: 183 TSTGIDTSIHHLTTTSTALATSTRHHVTTETETSTLVTTKTGLAYVTST 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,673
Number of Sequences: 59808
Number of extensions: 359574
Number of successful extensions: 693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)