Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0191
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   1.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   1.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    24   6.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.0  
SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...    24   9.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   9.0  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    24   9.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    24   9.0  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 240 KHY*SIFNLTTDFNNKQEYLHI 175
           K Y S FN T +  NKQE LH+
Sbjct: 275 KIYSSKFNATVEVKNKQEVLHM 296


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 130 GGRAHSPPGVKWLLEPIDIYN 68
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 317  LSYFYNHHCFIVGNRFRHYSQIILKINIINL 225
            LS+FY H  F V N    +S  +L + IINL
Sbjct: 1166 LSFFYAHAGFHVNNMVIMFSLQLLMLVIINL 1196


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 121 AHSPPGVKWLLEPIDIYNVNAPPTLR 44
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 15  RGLHLRPYLYLKVGGAFTL*MSMGSSNHLTPGG 113
           RGL  R    + +GGA    + +GS + L  GG
Sbjct: 75  RGLSTRHMQLMSIGGAIGSGLYVGSGSALADGG 107


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 184 VLLFIIKVCGQIENRLIMFIFNIIWL*WRNLLPTI 288
           ++LF        + R   F  + +W+ WRN LP +
Sbjct: 331 LVLFFTIFTNAYKLRQTNFTLDFLWVLWRNPLPQL 365


>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 198 NKQEYLHIDYTLNILNFFLLLRWVDELTAHLV 103
           N+QE   I+ ++N + F + ++ VDE+   LV
Sbjct: 56  NEQEQCLIESSVNSVRFSIRIKQVDEIERILV 87


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 320  LLSYFYNHHCFIVGNRFRHYSQIILKINIINL 225
            +LS++Y H  F + N F   S  +L +  +NL
Sbjct: 1257 MLSFYYAHAGFHLNNVFIMISMQLLMLVFVNL 1288


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 359 RISTTISLIIIMVLLSYFYNHHCFIV 282
           R+ + I   +   L  YF++ HCF +
Sbjct: 4   RVESVIVFALYKFLQRYFHSFHCFFL 29


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 242 SLILFGCSGEICYLL*NNGDYRNMT 316
           +L++ GCS   C +   N + RN+T
Sbjct: 110 NLVVCGCSNSSCIVYSWNAEQRNLT 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,642
Number of Sequences: 5004
Number of extensions: 29888
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)