Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0191
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30774| Best HMM Match : Vpu (HMM E-Value=5.7)                       29   1.6  
SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)              27   5.0  
SB_22475| Best HMM Match : Peptidase_A17 (HMM E-Value=3e-11)           27   6.5  
SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_30774| Best HMM Match : Vpu (HMM E-Value=5.7)
          Length = 161

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -3

Query: 356 ISTTISLIIIMVLLSYFYNHHCFIVGNRFRHYSQII 249
           I+   ++III++++ +  NHH FI G RF+  ++ I
Sbjct: 77  ITINFTIIIIIIIIIFNINHHIFI-GFRFQERAEEI 111


>SB_46250| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=2.6)
          Length = 190

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 9/20 (45%), Positives = 18/20 (90%)
 Frame = -3

Query: 356 ISTTISLIIIMVLLSYFYNH 297
           I  TI+LIII+++++++Y+H
Sbjct: 71  IIITINLIIIIIIITHYYHH 90


>SB_22475| Best HMM Match : Peptidase_A17 (HMM E-Value=3e-11)
          Length = 646

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -3

Query: 374 SPRSWRISTTISLIIIMVLLSYFYNHHCFIVGNRFRHYSQIILKINIINLFSI*PQTLII 195
           SP +W +   ++++ + +++S   N    ++  RF+   + I  I I NL  I    +++
Sbjct: 16  SPSAWSVGLRLTIVSLFLVISVLGNGSILVLLKRFKSL-RTIPNILIANLAFIDLMNVLV 74

Query: 194 N 192
           N
Sbjct: 75  N 75


>SB_17117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 374 SPRSWRISTTISLIIIMVLLSYFYNHHCFIVGNRFRHYSQIILKINIINLFSI 216
           SP S   S  I+LII +++    ++HH     + +RHY+  +  + II + ++
Sbjct: 274 SPLSALPSLCITLIITVIMHRLHHHHH-----HHYRHYASSLPSLCIIIIITV 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,765
Number of Sequences: 59808
Number of extensions: 223468
Number of successful extensions: 309
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)