Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0191
         (376 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09540.1 68416.m01133 pectate lyase family protein simliar to...    27   4.1  
At5g58750.1 68418.m07359 wound-responsive protein-related simila...    27   5.4  
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta...    27   5.4  
At3g22050.1 68416.m02781 receptor-like protein kinase-related co...    27   5.4  
At4g30060.1 68417.m04276 expressed protein contains Pfam profile...    26   7.1  
At5g22910.1 68418.m02679 cation/hydrogen exchanger, putative (CH...    26   9.4  

>At3g09540.1 68416.m01133 pectate lyase family protein simliar to
           style development-specific protein 9612 SP:P24396 from
           [Lycopersicon esculentum]
          Length = 378

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 299 HHCFIVGNRFRHYSQIILKINIINLFS 219
           HHCF  G R RH      K+++ N ++
Sbjct: 236 HHCFFDGTRQRHPRVRFAKVHLFNNYT 262


>At5g58750.1 68418.m07359 wound-responsive protein-related similar
          to induced upon wounding stress [Arabidopsis thaliana]
          GI:1483218
          Length = 386

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 17 RTTLETLLVSQGGWRIYVV 73
          R  ++TLL+S+ GWRIY V
Sbjct: 30 REIVKTLLMSKPGWRIYGV 48


>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
           BTB/POZ domain, INTERPRO:IPR000210
          Length = 517

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 228 SIFNLTTDFNNKQEYLHIDYTLNILNFFLLLRWVDELTAHLV 103
           S+ NLT  +  +  ++++DY   +L   LLL    E TA L+
Sbjct: 157 SLRNLTESYLRRVVFVNVDYIQIVLRSCLLLLPESETTAFLI 198


>At3g22050.1 68416.m02781 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function; weak similarity to receptor-like protein
           kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
          Length = 258

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -3

Query: 320 LLSYFYNHHCFIVGNRFRHYSQIILKINIIN 228
           L + + NH CF+   +++H  +    +N++N
Sbjct: 32  LTNEYLNHKCFVSEGKYKHGDKYENNLNVLN 62


>At4g30060.1 68417.m04276 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 401

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 368 RSWRISTTISLIIIMVLLSYFYNHH----CFIVGNR 273
           R W I   +SLI +  +++Y Y HH    C+++ +R
Sbjct: 33  RVW-IIMVLSLITMFFIMAYMYPHHSKRACYMISSR 67


>At5g22910.1 68418.m02679 cation/hydrogen exchanger, putative (CHX9)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 800

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 4   GGGHEDYT*DLTCISRWV 57
           G  HEDY+ DLT +++W+
Sbjct: 750 GRDHEDYSLDLTGLAQWM 767


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,452,779
Number of Sequences: 28952
Number of extensions: 154216
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)