Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0190
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 30 0.25
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 28 0.77
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 27 1.3
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 27 2.3
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 3.1
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 26 3.1
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 4.1
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 26 4.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 7.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.2
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 25 9.5
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 9.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 9.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 9.5
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 29.9 bits (64), Expect = 0.25
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = -3
Query: 257 QKRRKFDKKA-IKGRLIGYDEDCYRIWITDGKHSTLVRSRDVIFDEKPLPICNSEIPKTE 81
+K KF + I +GY ++C R W +H+ VR + + + ++
Sbjct: 608 KKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVRVESPVNELNSTMEEVKNVWNSQ 667
Query: 80 VETREYPITITPNTNLEREVTFQ 12
E + ITP L +T Q
Sbjct: 668 GEILRLYLEITPENELSSSLTHQ 690
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 0.77
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 301 CLIIGFFPYQSSCGDLSELV 360
CL+ GFF Y ++ GD+S+ V
Sbjct: 417 CLLFGFFAYINAAGDVSDTV 436
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +1
Query: 25 SLSKFVFGVMVIGYSLVSTS-----VLGISLLQIGRGF 123
SLS V GV ++GYS S+S +LGI+ + IG+ F
Sbjct: 134 SLSFVVLGVAIVGYSGSSSSIGSNPILGITAVLIGQFF 171
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 113 PICNSEIPKTEVETRE--YPITITPNTNLE 30
PI NSE K V+TR+ +T T T LE
Sbjct: 222 PIINSEFSKISVDTRDIFIDVTATDKTKLE 251
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -3
Query: 167 KHSTLVRSRDVIFDEKPLPICNSEIPKTEVETREYPITITPNTNL 33
K+ + R+ +FD K L E P+T+ + + +P + N +
Sbjct: 58 KNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGI 102
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 29 FLSSYLALW*SGILLSQLLF*EFHYYR*EEVSHRRLR 139
+L +W GILL +++ E YY EE+ +LR
Sbjct: 686 YLGKEQDIWALGILLYTIVYRENPYYNIEEILDAKLR 722
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.1
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -3
Query: 473 VSVTEIARSMMYAHEPLPQVLWAELINTAAYILNRTGPTSSDKSPHELW-----YGKKPI 309
+S+T IA +++ ++ + + + A+ +TG S D + +W YG I
Sbjct: 28 ISLTIIASILLFTGGTTTKIKYIDALFLASSATTQTGLNSVDLNSLSIWQQFILYGFTAI 87
Query: 308 IKHLRIIGSIAYVHIPKQKRRKF 240
+ + GSI+++ + RRKF
Sbjct: 88 TVPIWMHGSISFIRL-YWFRRKF 109
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -3
Query: 359 TSSDKSPHELWYGKKPIIKHLRIIGSIAYVHIPKQKRRKFDKK 231
+S+++ PH L YG K R++ + ++ P ++ K D++
Sbjct: 29 SSTNEFPHLLVYGPSGAGKKTRVVAILRELYGPGSEKLKIDQR 71
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 519 NSTATRHPVYT*TKRSKRNGDSKIN 445
N + PVYT K+S R+G S I+
Sbjct: 344 NGEKKQKPVYTNKKKSNRSGTSSIS 368
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 287 GSIAYVHIPKQKRRK--FDKKAIKGRLIGY 204
G++ ++ KQK++K D KA KGR I Y
Sbjct: 356 GTVRWMATKKQKQKKENVDTKASKGRKIRY 385
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = -3
Query: 341 PHELWYGKKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIGYDEDCYRIWITDGKH 162
P +WY ++ +++ SI Y P D+++ G+ D + GKH
Sbjct: 188 PQSVWYNEQQLLEQ----ASILYAENPNITLVTRDRQSY-----GFAVDAF------GKH 232
Query: 161 STLVRSRDVIFDEKPLPICNSEIPKT 84
+ ++ + D++F P+P P T
Sbjct: 233 NEVLLTPDIVFFMGPIPEIREATPIT 258
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 280 SHTSIFQSRSVENSTKRR*KVDLSGTTKIATVSGSQTENTRRSSALVT*SS 128
S TS+ R++ N+ + LS T+ S NTRRSS V+ +S
Sbjct: 33 SRTSLAPQRTLVNARQSIDPDGLSSRVLTPTMRPSLAPNTRRSSVRVSNAS 83
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 439 YIIDLAISVTLTPFCSGVY 495
Y +D I+V +TP+CS Y
Sbjct: 590 YKVDSPINVIITPYCSRQY 608
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 146 SRDVIFDEKPLPICNSEIPKTEVETREYPITITP 45
+R VI + L + +P++ +T YP T+TP
Sbjct: 355 ARTVITGDPNLSLDELGVPRSIAKTLTYPETVTP 388
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 102 ITDRKRFLIEDYVTRADERRVFS 170
++ R+RFL +D++ RA R + +
Sbjct: 700 LSKRQRFLYDDFINRARTREILA 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,820
Number of Sequences: 5004
Number of extensions: 52703
Number of successful extensions: 168
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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