Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0190
(541 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24000.1 68417.m03449 cellulose synthase family protein simil... 30 1.1
At1g19025.1 68414.m02368 DNA cross-link repair protein-related c... 29 2.0
At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B... 29 2.6
At3g21430.1 68416.m02704 expressed protein 28 3.5
At1g05700.1 68414.m00591 leucine-rich repeat protein kinase, put... 28 4.6
At3g63500.2 68416.m07153 expressed protein 27 6.1
At3g63500.1 68416.m07152 expressed protein 27 6.1
At1g50560.1 68414.m05673 cytochrome P450, putative similar to CY... 27 6.1
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ... 27 8.0
At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /... 27 8.0
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ... 27 8.0
>At4g24000.1 68417.m03449 cellulose synthase family protein similar
to cellulose synthase from Gossypium hirsutum
[gi:1706956], cellulose synthase-5 from Zea mays
[gi:9622882]
Length = 722
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/98 (24%), Positives = 40/98 (40%)
Frame = +1
Query: 13 WNVTSLSKFVFGVMVIGYSLVSTSVLGISLLQIGRGFSSKITSRERTSVECFPSVIQIR* 192
W V LS F FG ++ S G ++ + ++ E+ + PS
Sbjct: 583 WMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPS------ 636
Query: 193 QSSSYPISRPFIAFLSNFLRFCFGIWTYAIEPIIRRCL 306
S PI+ I L F+R +GI+T+ P++ L
Sbjct: 637 SSMFLPITTVAIMNLLAFMRGLYGIFTWGEGPVLELML 674
>At1g19025.1 68414.m02368 DNA cross-link repair protein-related
contains weak similarity to Swiss-Prot:P30620 DNA
cross-LINK repair protein PSO2/SNM1 [Saccharomyces
cerevisiae]
Length = 549
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 100 LLQIGRGFSSKITSRERTSVECFPSVIQI 186
LL++ R F SKI + T++ECF S++ I
Sbjct: 204 LLEVSRTFGSKIYVDKATNLECFRSLMVI 232
>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
domain-containing protein low similarity to Rev1S [Homo
sapiens] GI:12483635; contains Pfam profiles PF00817:
ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
domain
Length = 1102
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -3
Query: 230 AIKGRLIGYDEDCYRIWITDGKHSTLVRSRDVIFDEKPLPICNSEIPK--TEVETREYP 60
A K +I D DC+ + S ++++R + D KP+ +C+S+ PK E+ + YP
Sbjct: 370 AKKSTIIHIDLDCFFV-------SVVIKNRLELHD-KPVAVCHSDNPKGTAEISSANYP 420
>At3g21430.1 68416.m02704 expressed protein
Length = 961
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 158 TLVRSRDVIFDEKPLPICNSEIPKTEVETREYPITITPN 42
T VRSR I EKPL I + +I +T V T+ PN
Sbjct: 373 TKVRSRRKIVTEKPLTIDDGKISETIVSELSDTQTLFPN 411
>At1g05700.1 68414.m00591 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase, gi|2129635; contains leucine rich repeat (LRR)
domains, Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 843
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = -3
Query: 248 RKFDKKAIKGRLIGYDEDCY-RIWI 177
R++D +++ G + YD+D Y RIWI
Sbjct: 196 RRWDLRSLMGSPVRYDDDVYDRIWI 220
>At3g63500.2 68416.m07153 expressed protein
Length = 1162
Score = 27.5 bits (58), Expect = 6.1
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = -3
Query: 260 KQKRRKFDKK--AIKGRLIGYDEDCYRI--WITDGKHSTLVRSRDVIFDEKPLPICNSEI 93
KQ R+ D ++K +LIG E C RI +I+D ST + E+P P
Sbjct: 942 KQLRQAADAMLASLKSKLIGLPEACNRILGFISDCDSSTPAETSAPFIYEQPKPRHERGS 1001
Query: 92 PKTEVETREYPITITPNTNLEREVT 18
P + + P+ L+R +
Sbjct: 1002 PSQDTAWLRSVCSDNPHNQLKRSAS 1026
>At3g63500.1 68416.m07152 expressed protein
Length = 887
Score = 27.5 bits (58), Expect = 6.1
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Frame = -3
Query: 260 KQKRRKFDKK--AIKGRLIGYDEDCYRI--WITDGKHSTLVRSRDVIFDEKPLPICNSEI 93
KQ R+ D ++K +LIG E C RI +I+D ST + E+P P
Sbjct: 667 KQLRQAADAMLASLKSKLIGLPEACNRILGFISDCDSSTPAETSAPFIYEQPKPRHERGS 726
Query: 92 PKTEVETREYPITITPNTNLEREVT 18
P + + P+ L+R +
Sbjct: 727 PSQDTAWLRSVCSDNPHNQLKRSAS 751
>At1g50560.1 68414.m05673 cytochrome P450, putative similar to
CYTOCHROME P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max]
Length = 519
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 323 GKKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIG 207
G+ PI++ + GS +V +P +F KK + +L+G
Sbjct: 114 GQTPIMEKSLLFGSFGFVSVPYGDYWRFMKKLLVKKLLG 152
>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 912
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 485 EQNGVSVTEIARSMMYAHEPLPQVLWAELINT 390
E+NG + +E+ ++ M +E LPQV W +N+
Sbjct: 2 EKNGHTESEL-QTQMVGNERLPQVTWQRKLNS 32
>At4g01890.1 68417.m00247 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:7381227;
contains PF00295: Glycosyl hydrolases family 28
(polygalacturonases)
Length = 468
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 463 VTLTPFCSGVYGVTSRCAIPCVS 531
+ + PFC YG+T ++P +S
Sbjct: 425 IVVGPFCWNAYGITDEFSVPLIS 447
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 194 CYRIWITDGKHSTLVR-SRDVIFDEKPLPICNSEIPKTEVETREYPITITPNTNL-EREV 21
C W+ HS + V+ D+K +P+ +T+ ++ YP PN +R
Sbjct: 51 CLYRWLHHHSHSQECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPE 110
Query: 20 TFQPPP 3
T PPP
Sbjct: 111 TAAPPP 116
>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 907
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 217 DLSGTTKIATVSGSQTENTRRSSALVT*SSMRNLFLSVIVKFLKQKLRQE 68
DL G T++ T++ T T + + S +RNL IV +K+R+E
Sbjct: 696 DLCGMTRLMTLAIRLTRVTSTETLSASISGLRNLEYLYIVGTHSKKMREE 745
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,541,342
Number of Sequences: 28952
Number of extensions: 271448
Number of successful extensions: 776
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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