Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0187
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   2.5  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   3.3  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   3.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   5.8  

>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 375 KKKAFEDAGIPVRQVTLNMLNASENEVDVEELTNDV-KLEFESEPGNEEVAIRNLF 539
           KK+ F DA +   Q + +  N   NE    ELTN+  KL    +P NEEV+ R  F
Sbjct: 18  KKRRF-DANLVQLQESEHR-NDQINETVDAELTNECWKLYMRLKPSNEEVSRRQQF 71


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
 Frame = -3

Query: 200 FIECSSRLSKNFPNFSCRI---IHFLIIYCKKMLNAKL------HITXXXXXKLETSSLS 48
           F +CS  +S+ +    C I   +H   +   K  N +L      ++       L TSS+S
Sbjct: 229 FGQCSQPISEEYTGQGCMIFRSLHISSLVAAKSKNLRLSLDMFSNVNNQLLSHLVTSSIS 288

Query: 47  LVPIPAARGS 18
           +V  P+ +GS
Sbjct: 289 IVSKPSKKGS 298


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 408 VRQVTLNMLNASENEVDVEELTNDVKLEFESEPGNEEVAIRN 533
           V  V L   N   NE + + +  + K E  +EP  EE+ I N
Sbjct: 751 VDPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYN 792


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/78 (20%), Positives = 36/78 (46%)
 Frame = -3

Query: 455 NFVLGCVQHVKRYLSHRYTCVFKSFLLQR*SNLIYCPILNVLTEFIQVYCKSMYTIAQHF 276
           N ++  ++ ++ Y  HR    F   + ++   +    +L+VLT  ++ Y   +       
Sbjct: 74  NCIIALLKGLEGYHQHRVLLYFVDSIHEKKDYIEIINVLSVLTSCLEEYGNQINQQETFI 133

Query: 275 YFFFSPFTSRLRISHGMK 222
            FFF    S+  +S+G++
Sbjct: 134 RFFFK--YSKTNLSYGVR 149


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 198 KLSEMTMLLHPMGDSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNR 347
           ++ +  +LL+ +    P G   EEE++    CV R A  +N+  +  +NR
Sbjct: 360 RICKYPLLLNQLLKGTPSGYQYEEELKQGMACVVRVANQVNETRRIHENR 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,035
Number of Sequences: 5004
Number of extensions: 46794
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)