Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0187
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0388 - 3003096-3003149,3003168-3003197,3003245-3003304,300...    36   0.030
01_06_0989 - 33618841-33619161                                         33   0.21 
06_03_1491 - 30510016-30510021,30510418-30511026,30511119-305114...    31   0.64 
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518     31   1.1  
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531...    30   2.0  
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760...    29   2.6  
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617...    29   3.4  
05_01_0456 - 3619537-3619581,3619687-3619808,3619940-3620059,362...    29   4.5  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    29   4.5  
06_01_1119 - 9218735-9219529,9219809-9220330                           28   6.0  
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388...    28   7.9  
06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168...    28   7.9  
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839...    28   7.9  

>01_01_0388 -
           3003096-3003149,3003168-3003197,3003245-3003304,
           3003431-3003552,3003669-3003794,3003890-3003980,
           3004261-3004386,3004501-3004656
          Length = 254

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 228 PMGDSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           P   ++P  +W+EEE E   + +  +  D  K+ +H+  +T  QIRS  +K
Sbjct: 9   PYTITKPRERWSEEEHERFLDALIMYGRDWKKIEEHVGTKTTIQIRSHAQK 59


>01_06_0989 - 33618841-33619161
          Length = 106

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 252 GKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNR-TVNQIRSTLKKKAFEDAGIPVRQVTLN 428
           G+W +EE +  +  +H  A         +K R T  Q++  L+K A E  G PV +V   
Sbjct: 18  GEWEDEEEQQQQQHLHEMAAVEKMERVEVKIRVTRRQLQELLEKAAGEGKGRPVEKVLAE 77

Query: 429 MLNASE 446
           M+++ +
Sbjct: 78  MISSGK 83


>06_03_1491 -
           30510016-30510021,30510418-30511026,30511119-30511484,
           30511660-30511721,30511826-30511937,30512074-30512211,
           30512788-30512811
          Length = 438

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           KWTEEE +     +  +     ++ +HI  +T  QIRS  +K
Sbjct: 67  KWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQIRSHAQK 108


>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
          Length = 783

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 105 IKHFFAINY-QKMNNSAAKVGEIFREAGTAFNKLSEMTM-LLHPMGDSQPGGKWTEEEIE 278
           + H F + + QK +        I  +      KL+E+ M  L+P GD +P  K   E ++
Sbjct: 672 LSHIFPLMFHQKRHCDMLDFDMIDEKVMVVLQKLAELAMHCLNPRGDDRPTMKEVAERLQ 731

Query: 279 MLR 287
           MLR
Sbjct: 732 MLR 734


>06_03_1070 -
           27351781-27351882,27352461-27352520,27353033-27353142,
           27353583-27353693,27353781-27353939,27354035-27354158,
           27354755-27354812,27356656-27356933
          Length = 333

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           WTE E +     +  F  D  K+  ++ ++TV QIRS  +K
Sbjct: 79  WTEPEHDKFLEALQLFDRDWKKIEAYVGSKTVIQIRSHAQK 119


>04_04_0929 -
           29474540-29475247,29475485-29475850,29476032-29476093,
           29476191-29476302,29476401-29476529,29476724-29476738
          Length = 463

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           KWTE+E ++    +        ++ +HI  +T  QIRS  +K
Sbjct: 61  KWTEDEHKLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQK 102


>02_05_0337 -
           28060009-28060716,28061055-28061498,28061732-28061793,
           28061896-28062007,28062144-28062263
          Length = 481

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           KWT+EE  +    +        ++ +HI  +T  QIRS  +K
Sbjct: 53  KWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQK 94


>05_01_0456 -
           3619537-3619581,3619687-3619808,3619940-3620059,
           3620143-3620413,3620555-3620612,3620698-3620822
          Length = 246

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 228 PMGDSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
           P   ++P  +W+ EE E   + +  F  D  ++   +  +T  QIRS  +K
Sbjct: 18  PYTITRPRERWSAEEHERFLDALILFGRDWKRIEAFVATKTAIQIRSHAQK 68


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +3

Query: 249 GGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRS 368
           G +W+++E+E       ++  D  K++  I++RT   + +
Sbjct: 132 GSQWSKDELERFYGSYRKYGKDWRKVASSIRDRTSEMVEA 171


>06_01_1119 - 9218735-9219529,9219809-9220330
          Length = 438

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 216 MLLHPMGDSQPGGKWTEEEIEMLRNCVH 299
           M+L P G     G W  E++ +  +CVH
Sbjct: 383 MVLRPDGHPSRYGHWAHEKVTLYNDCVH 410


>12_01_0490 +
           3878436-3878466,3878559-3879113,3879218-3879777,
           3880660-3880965,3881071-3881202,3881623-3881756,
           3881939-3882015,3882084-3882226,3883376-3883633,
           3884085-3884111
          Length = 740

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
 Frame = +3

Query: 15  SGSPGCRNRHEG--ERTSLEXXXXXXGYM*FGIKHFFAINYQKMNNS-AAKVGEIFREAG 185
           S SPG  N   G  E+T LE       +  F  +   +++Y+    +  A   + F +A 
Sbjct: 339 SSSPGMENGDAGFDEKTLLERLSE--SFCSFCAQPLPSLHYESQKEADIALCSDCFHDAR 396

Query: 186 --TAFNKLSEMTMLLHPMGDSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQ 359
             T  + L    +     G    G  WT++E  +L   + ++  + N +++H+  ++  Q
Sbjct: 397 FVTGHSSLDFQRVDGKKDGLDNDGDSWTDQETFLLLEGIDKYKENWNAVAEHVGTKSKIQ 456

Query: 360 IRSTLKKKAFED 395
                 +   ED
Sbjct: 457 CLHHFLRLPVED 468


>06_03_1168 -
           28114656-28114721,28114800-28114889,28115139-28116877,
           28117146-28117227,28117794-28117865,28119412-28119453,
           28120352-28120401,28121253-28121372,28121635-28121707,
           28121828-28122100,28122413-28122517,28122730-28122859,
           28123106-28123356,28123787-28123993,28124185-28124455,
           28124808-28124914
          Length = 1225

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 210 MTMLLHPMGDSQPGGKWTEEEIEMLRN 290
           +T LLH  GD+  GGK       +LRN
Sbjct: 901 LTTLLHACGDAGSGGKLVASSFAVLRN 927


>02_04_0498 +
           23480930-23481186,23483615-23483705,23483790-23483935,
           23484029-23484248,23484314-23484422,23484518-23484686,
           23484801-23484975
          Length = 388

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 449 VLGCVQHVKRYLSHRYTCVFKSFLL 375
           V+G V H+  +L+  Y C +KSF +
Sbjct: 248 VIGKVPHLSEFLNSLYNCQYKSFFV 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,402
Number of Sequences: 37544
Number of extensions: 273201
Number of successful extensions: 638
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)