Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0187
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13999| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.0058)        60   2e-09
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)        34   0.093
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)             34   0.093
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)                    31   1.1  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         30   1.5  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               29   3.5  

>SB_13999| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.0058)
          Length = 120

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +3

Query: 252 GKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKKKAFE 392
           GKW ++EIEMLR+ V +F  DL K+S HIK ++V QI++ LKKK  E
Sbjct: 40  GKWGDQEIEMLRHAVSKFGDDLKKISAHIKTKSVGQIKTALKKKIHE 86


>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
          Length = 1709

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 25/90 (27%), Positives = 46/90 (51%)
 Frame = +3

Query: 234 GDSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKKKAFEDAGIPVR 413
           G+++   K  E EI+ LRN +      +NKL +++  RT  ++ S  +K    ++ +   
Sbjct: 78  GNTETHIKECEREIQKLRNTIEDKNYHINKLQKNLL-RTQMEMESEQEK---HESELEEL 133

Query: 414 QVTLNMLNASENEVDVEELTNDVKLEFESE 503
           +  L+ L  S+ E  VEE   ++K  +E E
Sbjct: 134 RAQLDKLENSDTESLVEERMKELKANYERE 163


>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
          Length = 1102

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +3

Query: 264 EEEIEMLRNCVHRFAVDLNKLSQHIKNRT--VNQIRSTLKKKAFEDAGIPVRQVTLNMLN 437
           +++++++RN ++  + +L +L  +  + T  +  IR+TLK+ A     +  R+  +  L 
Sbjct: 500 KQDVDVVRNELNAVSDELAQLKMYFTSNTHTMTDIRNTLKENAQLLVVLDSREERIRALE 559

Query: 438 ASENEVDVEELTNDVKLEFESEPGNEEV 521
            ++ +   E  T+  KLE+    GN  +
Sbjct: 560 GAQQDKKAELSTDISKLEYRVNIGNSRI 587


>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +3

Query: 135 KMNNSAAKVGEIFREAGTAFNKLSEMTMLLHPMGDSQ---PGGKWTEEEIEMLRNCVHRF 305
           K  N   K  E+ R    +F++  E + +L      Q   P  K  E+EI+MLR+ V + 
Sbjct: 485 KAENLDDKTEELRRLDEKSFSQAEESSKILEVCPTKQAFKPENK--EDEIQMLRSLVRQQ 542

Query: 306 AVDLNKLSQHIKNRTVNQIRSTLKKK 383
                 L + ++N     IRS L K+
Sbjct: 543 EDATRLLGEKLRNEAQEHIRSALTKE 568


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 321 KLSQHIKNRTVNQIRSTLKKKAFEDAGIPVRQVTLNMLNASENEVDVE-ELTNDVKLEFE 497
           K  ++ KN+  N+ +  +KKK  E+A   V + TL   N  E   + E E   + K+E E
Sbjct: 38  KNKKNKKNKNKNKKKKKMKKKKEEEA--EVGEKTLEAENEEEKIEETEKEKDEEEKIEEE 95

Query: 498 SEPGNEE 518
            + G EE
Sbjct: 96  EKEGGEE 102


>SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)
          Length = 365

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
 Frame = +3

Query: 126 NYQKMNNSAAKVGEIFREAGTAFNKLSEMTMLLHPMGDSQPGGKWTEEEIEMLRNCVHRF 305
           N    N    +V EIF+ AG   +  +E   L   +G++  G K+    ++  R     +
Sbjct: 118 NSGPFNEDLQEVIEIFKNAGNFASTETEEEFLKSQLGETLKGPKFAR--LDSRRPEFSSW 175

Query: 306 AVDLNKLSQ-------HIKNRTVNQIRSTLKKKAFEDAGIPVRQVTLNMLNASENEVDVE 464
            ++ ++L+         IK   V + +S  K+K  ED+G   R      L+  EN V   
Sbjct: 176 WIEFSELTHMECPQPDKIKREIVQEKKSKNKEK--EDSGQKWRVEVAQRLSVRENYVRFA 233

Query: 465 ELTNDVKLEFESEPGNEEVA 524
            +   +   F    GN+++A
Sbjct: 234 GIARHMVYWFIYRGGNDKIA 253


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRS 368
           KWT EE+ +    V ++  D   +++ + N++V+Q R+
Sbjct: 441 KWTNEELLLAVQSVRKYGKDFQAMAEVLGNKSVSQCRN 478


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQ 359
           +WT++E  +L   +  F  D NK+++H+  RT ++
Sbjct: 726 EWTDQETLLLLEGMELFKDDWNKVAEHVGTRTQDE 760


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/95 (24%), Positives = 49/95 (51%)
 Frame = +3

Query: 132 QKMNNSAAKVGEIFREAGTAFNKLSEMTMLLHPMGDSQPGGKWTEEEIEMLRNCVHRFAV 311
           +K+  SA  V ++  +  +A +++ +    L    + +      EEE+  LR+  H+ A+
Sbjct: 139 RKLRASARHVSQLVLDLQSAEDEIRQTRERLD---EEEANSVKLEEEMMYLRS-EHKVAI 194

Query: 312 DLNKLSQHIKNRTVNQIRSTLKKKAFEDAGIPVRQ 416
           +  K + H   RT++ +R TLKK+  E+  +  ++
Sbjct: 195 ETLK-ADH--ERTIDGLRYTLKKQQMEELALAAQE 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,015,839
Number of Sequences: 59808
Number of extensions: 330998
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)