Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0187
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4... 34 0.076
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 34 0.10
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 34 0.10
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 33 0.13
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 33 0.13
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 33 0.13
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 33 0.13
At1g01520.1 68414.m00068 myb family transcription factor similar... 33 0.18
At1g01060.2 68414.m00007 myb family transcription factor contain... 32 0.31
At1g01060.1 68414.m00006 myb family transcription factor contain... 32 0.31
At4g01280.1 68417.m00169 myb family transcription factor contain... 32 0.41
At3g09600.1 68416.m01140 myb family transcription factor contain... 31 0.54
At2g42700.1 68415.m05287 expressed protein 31 0.94
At2g34780.1 68415.m04270 expressed protein 31 0.94
At3g10113.1 68416.m01212 myb family transcription factor contain... 30 1.2
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 30 1.2
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 30 1.2
At1g18330.1 68414.m02290 myb family transcription factor contain... 30 1.2
At5g37260.1 68418.m04476 myb family transcription factor contain... 30 1.6
At5g52660.2 68418.m06538 myb family transcription factor contain... 29 2.9
At5g52660.1 68418.m06537 myb family transcription factor contain... 29 2.9
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 3.8
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 3.8
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 29 3.8
At5g17300.1 68418.m02026 myb family transcription factor similar... 28 6.6
At5g03780.1 68418.m00343 expressed protein 28 6.6
At4g29770.1 68417.m04239 expressed protein 28 6.6
At2g47620.1 68415.m05941 SWIRM domain-containing protein / DNA-b... 28 6.6
At5g59660.1 68418.m07480 leucine-rich repeat protein kinase, put... 27 8.8
At4g30240.1 68417.m04300 expressed protein predicted protein, Ar... 27 8.8
At1g15780.1 68414.m01893 expressed protein 27 8.8
>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 961
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 252 GKWTEEEIEMLRNCVHRF-AVDLNKLSQHIKNRT 350
G+WT EE E+LR VH F + K++++ K+RT
Sbjct: 30 GQWTAEEDEILRKAVHSFKGKNWKKIAEYFKDRT 63
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 252 GKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQ 359
GKWTEEE E LR + +K++ ++ RT NQ
Sbjct: 386 GKWTEEEDEKLREAIAEHGYSWSKVATNLSCRTDNQ 421
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 252 GKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQ 359
GKWTEEE E LR + +K++ ++ RT NQ
Sbjct: 599 GKWTEEEDEKLREAIAEHGYSWSKVATNLSCRTDNQ 634
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 165 EIFREAGTAFNKLSEMTMLLHPMGDSQPG-GKWTEEEIEMLRNCVHRFAVDLNKLSQHIK 341
E F + + S +L+ P G GKWT++E +L + F + N++++H+
Sbjct: 335 ECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVA 394
Query: 342 NRTVNQIRSTLKKKAFEDA 398
+T Q + EDA
Sbjct: 395 TKTKAQCMLHFLQMPIEDA 413
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 165 EIFREAGTAFNKLSEMTMLLHPMGDSQPG-GKWTEEEIEMLRNCVHRFAVDLNKLSQHIK 341
E F + + S +L+ P G GKWT++E +L + F + N++++H+
Sbjct: 335 ECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVA 394
Query: 342 NRTVNQIRSTLKKKAFEDA 398
+T Q + EDA
Sbjct: 395 TKTKAQCMLHFLQMPIEDA 413
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 165 EIFREAGTAFNKLSEMTMLLHPMGDSQPG-GKWTEEEIEMLRNCVHRFAVDLNKLSQHIK 341
E F + + S +L+ P G GKWT++E +L + F + N++++H+
Sbjct: 335 ECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVA 394
Query: 342 NRTVNQIRSTLKKKAFEDA 398
+T Q + EDA
Sbjct: 395 TKTKAQCMLHFLQMPIEDA 413
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 165 EIFREAGTAFNKLSEMTMLLHPMGDSQPG-GKWTEEEIEMLRNCVHRFAVDLNKLSQHIK 341
E F + + S +L+ P G GKWT++E +L + F + N++++H+
Sbjct: 335 ECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVA 394
Query: 342 NRTVNQIRSTLKKKAFEDA 398
+T Q + EDA
Sbjct: 395 TKTKAQCMLHFLQMPIEDA 413
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTE+E + +H F D K+ + ++TV QIRS +K
Sbjct: 64 WTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQK 104
>At1g01060.2 68414.m00007 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK------KAFEDAGIPVRQ 416
+WTE+E E + + ++ +HI +T QIRS +K K E GIPV Q
Sbjct: 26 RWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQ 85
>At1g01060.1 68414.m00006 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA LATE ELONGATED HYPOCOTYL MYB
transcription factor GI:3281845
Length = 645
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK------KAFEDAGIPVRQ 416
+WTE+E E + + ++ +HI +T QIRS +K K E GIPV Q
Sbjct: 26 RWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAEVKGIPVCQ 85
>At4g01280.1 68417.m00169 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 302
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WT++E + +H F D K+ + ++TV QIRS +K
Sbjct: 62 WTDQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQK 102
>At3g09600.1 68416.m01140 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTEEE + + F D K+ + ++TV QIRS +K
Sbjct: 46 WTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 86
>At2g42700.1 68415.m05287 expressed protein
Length = 788
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 237 DSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKKKAFEDAGIPVRQ 416
D P GKW +EE E + N + D +L +++R + R K + +P+R+
Sbjct: 606 DDDPWGKWGDEEEEEVDNSKADESYDDMQLKLDLRDRVDSLFRFLHKLSSLRTRNLPLRE 665
Query: 417 VTL 425
+L
Sbjct: 666 GSL 668
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +3
Query: 270 EIEMLRNCVHRFAVDLNKLSQH---IKNRTVNQIRSTLKKKAFEDAGIPVRQVTLNMLNA 440
E+E+LRN H+ + DL L+ + +K + + + TLK+K D + + +
Sbjct: 208 ELEVLRNSAHKTSSDLLTLTSNLETVKKQLELEKQKTLKEKKRADMESAKARDQMKLAED 267
Query: 441 SENEVDVEELTN-DVKLEFESEPGNEEV 521
+ ++ N ++K E ES+ + +V
Sbjct: 268 VSKKFEIVRARNEELKKEMESQTASSQV 295
>At3g10113.1 68416.m01212 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 336
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
KW+EEE + + + ++ +HI +T QIRS +K
Sbjct: 67 KWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQK 108
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
+WTEEE + + K+ +H+ +T QIRS +K
Sbjct: 26 RWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQK 67
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 3/140 (2%)
Frame = +3
Query: 105 IKHFFAINYQKMNNSAAKVGEIFREAGTAFNKLSEMTMLLHPMGDSQPGGKWTEEEIEML 284
IK + K N ++ ++ E+ + + K T + KW +EIE L
Sbjct: 347 IKPLYESQVDKENQTSKRINELEKTLSILYQKQGRATQF----SNKAARDKWLRKEIEDL 402
Query: 285 RNCVHRFAVDLNKLSQHI--KNRTVNQIRSTLKKKAFEDAGIPVR-QVTLNMLNASENEV 455
+ + V KL I N + + +KK E + R + + N + E
Sbjct: 403 KRVLDSNTVQEQKLQDEILRLNTDLTERDEHIKKHEVEIGELESRISKSHELFNTKKRER 462
Query: 456 DVEELTNDVKLEFESEPGNE 515
D E+ K ES+ +E
Sbjct: 463 DEEQRKRKEKWGEESQLSSE 482
>At1g18330.1 68414.m02290 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 346
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
KW+EEE + + + ++ +HI +T QIRS +K
Sbjct: 52 KWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQK 93
>At5g37260.1 68418.m04476 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 287
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK---KAFEDAGIPVRQVTL 425
KWTE E E + + ++ +H+ +T QIRS +K K D G+ + +
Sbjct: 38 KWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFTKVARDFGVSSESIEI 97
>At5g52660.2 68418.m06538 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 331
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTE E + + F D K+ I ++TV QIRS +K
Sbjct: 75 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 115
>At5g52660.1 68418.m06537 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 330
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTE E + + F D K+ I ++TV QIRS +K
Sbjct: 75 WTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 115
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTE E + + F D K+ + ++TV QIRS +K
Sbjct: 51 WTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 91
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
WTE E + + F D K+ + ++TV QIRS +K
Sbjct: 51 WTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQK 91
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 282 LRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKKKAFEDAGIP-VRQVTLNMLNASENEVD 458
L + R VD K + + +N+I + K + G+P +R L +E E +
Sbjct: 772 LSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKDFSQSVGVPNIRVYEETQLKTAEKEAE 831
Query: 459 VE-ELTNDV-KLEFESE-PGNEEVAIR 530
EL+N + KL+++ E N +V R
Sbjct: 832 ERLELSNQLAKLKYQLEYEQNRDVGSR 858
>At5g17300.1 68418.m02026 myb family transcription factor similar to
CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
profile PF00249: Myb-like DNA-binding domain
Length = 387
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKK 380
+WT+EE + + + ++ +H+ ++T QIRS +K
Sbjct: 57 RWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQK 98
>At5g03780.1 68418.m00343 expressed protein
Length = 420
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNK 323
WT EE EML+ V +FA + NK
Sbjct: 350 WTYEEEEMLKVGVEKFAAEANK 371
>At4g29770.1 68417.m04239 expressed protein
Length = 277
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +3
Query: 102 GIKHFFAINYQKMNNSAAKVGEIFREAGTAFNKLSEMTMLLHPMGDSQPGGKWTEEEIEM 281
G++ + +K+ +I + T+F K+S +M+L GD + + TE +
Sbjct: 209 GLRDVLMVEAEKIKGETVFTVQICYKKKTSFVKVSTRSMILPLNGDDE--SQVTEPACLL 266
Query: 282 LRNCVHRFAVD 314
+ C+ RF+++
Sbjct: 267 VDFCIPRFSIN 277
>At2g47620.1 68415.m05941 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domains PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 512
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +3
Query: 258 WTEEEIEMLRNCVHRFAVDLNKLSQHIKNRTVNQIRSTLKKKAFEDAGIPVRQVTLNMLN 437
WTEEEI +L V + D +SQ + ++ S L + F + + LN
Sbjct: 228 WTEEEILLLLESVLKHGDDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSI 287
Query: 438 ASENEVDVEELTNDVKLEFESEPGNEE 518
+E+E + E++ D + E+E E+
Sbjct: 288 LTEDE-NTEQVQTDGQEHEETETREEK 313
>At5g59660.1 68418.m07480 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 842
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -1
Query: 340 LMC*LSLFRSTANLCTQLRSISISSSVHLPPGCESPMG*RSIVISDNLLNAVPASL---K 170
L+C S T + Q +IS+ +SV PG PMG S+ LNA +S+ K
Sbjct: 745 LVCENSRMSKTRGMEYQEMNISLDTSV--VPGARYPMGQTSVCEWRQFLNANQSSIAGEK 802
Query: 169 ISPTLAAE 146
+SP A+
Sbjct: 803 VSPPGTAD 810
>At4g30240.1 68417.m04300 expressed protein predicted protein,
Arabidopsis thaliana
Length = 300
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Frame = +3
Query: 255 KWTEEEIEMLRNCVHRFAVDLNKLSQH------IKNRTVNQIRSTLKKKAFEDAGIPVRQ 416
KW EE E + H D L++H I+N+ + Q+ STL + E+ P+R
Sbjct: 64 KWQLEEFERAVSLSHGNCRDDTTLTRHKQFVTAIENQ-IYQVESTLLESLSENGKQPLRW 122
Query: 417 VTLN 428
V LN
Sbjct: 123 VDLN 126
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 237 DSQPGGKWTEEEIEMLRNCVHRFAVDLNKLSQHI 338
+S GG W EE + +++ + DLN++ Q +
Sbjct: 586 ESANGGDWQEEVYQKIKSMKETYLPDLNEIYQRV 619
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,676
Number of Sequences: 28952
Number of extensions: 235287
Number of successful extensions: 689
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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