Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0183
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.23 
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   2.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   3.8  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   6.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   8.7  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    24   8.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 421 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 275
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 63  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 161
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 43  IGTRIRETQATNMKTIICLFTIAIAAMAAVTN 138
           +G R+RETQA N K++ CL  + I A+   +N
Sbjct: 734 VGDRLRETQAIN-KSLSCLGDV-IHALGNASN 763


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 136 NLSNVLKNGNDNFTARMFTEVV 201
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 204 FHYFGKHSGCEVIVS---IFEHIREICDGCHCRDGDSKQTNDCLH 79
           F  FG+H  CEV+++   +     EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 400 LSSTPLIDRRSRLLLANSVRIA-SSSGKPIAFKSSSWVSPSEA 275
           LSS+ +I   S  +L++S   A SSS       SSS+ SP+ +
Sbjct: 35  LSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASS 77


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 97  LFTIAIAAMAAVTNL-SNVLKNGNDNFTARMFTEVVKNNPGXKRC-PXRHF 243
           LFT A+  +   TN+ SN +K GN N T R+  +  KN+       P +HF
Sbjct: 11  LFT-AMFDLDKNTNIESNHVKIGNKNTTRRLIIKSSKNSVRIAYAPPEKHF 60


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 400 LSSTPLIDRRSR-LLLANSVRIASSSGKPIAFKSSSW 293
           +  +PL    SR L LANSVR AS +       +S W
Sbjct: 16  IPKSPLALSASRNLRLANSVRFASDAASSPKSTTSKW 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,072
Number of Sequences: 5004
Number of extensions: 30905
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)