Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0183
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 0.91
01_06_1152 + 34939884-34941824 29 2.1
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 2.8
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 28 2.8
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 27 6.4
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 27 6.4
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 27 6.4
06_01_0607 - 4390830-4391510,4391712-4391882,4391970-4392086,439... 27 6.4
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 27 8.5
08_02_0902 - 22408895-22409620,22410190-22410326,22410550-224106... 27 8.5
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 0.91
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 410 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 276
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>01_06_1152 + 34939884-34941824
Length = 646
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -3
Query: 312 LSKALHGFHHQKLKLTEREEAAPKMPXRTTLXPWIIFHYFGKHSGCEVIVSIFE 151
L AL FH + L + +E +MP R+ + + +G H ++ V +FE
Sbjct: 310 LCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFE 363
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 385 LIDRRSRLLLANSVRIASSSGK 320
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 171 VIVSIFEHIREICDGCHCRDGDSKQTNDCLHVCGLRLSN-PRADSCSPGDP 22
VI S+ + + C GC C D + T C +VCG++ S +A SC +P
Sbjct: 56 VINSVLDKPKFRC-GCKCVDVNG--TGSCQNVCGIQYSTLDQAGSCPIPNP 103
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 189 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 85
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -3
Query: 189 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 85
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -1
Query: 428 IMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 276
++N+ +R ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 134 VLNI--VRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 182
>06_01_0607 -
4390830-4391510,4391712-4391882,4391970-4392086,
4392314-4392573,4393346-4393760
Length = 547
Score = 27.1 bits (57), Expect = 6.4
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 171 LHSQNVYRSSEK*SRXKALSXSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDA 338
LH N+ R+ K L +A +LP LA L L + + LL A P+DDA
Sbjct: 445 LHVLNITRTEFKNLWAAILIRNAMRLLP-LALLFLVPRSDQNSNLLPADLLPEDDA 499
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 26.6 bits (56), Expect = 8.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 141 EICDGCHCR 115
E CDGCHCR
Sbjct: 1322 EYCDGCHCR 1330
>08_02_0902 -
22408895-22409620,22410190-22410326,22410550-22410685,
22410787-22411224
Length = 478
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +3
Query: 69 GHKHEDNHLFVYYRHRGNGS--RH--KSL*CAQKWKR 167
G+ +ED H + Y + NGS +H KSL A W R
Sbjct: 165 GYCYEDEHRMLVYEYMSNGSLEKHLFKSLDGAMPWMR 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,051
Number of Sequences: 37544
Number of extensions: 221946
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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