Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0183
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 28 2.3
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 28 3.1
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ... 27 5.4
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ... 27 5.4
At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorgani... 27 5.4
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 5.4
At1g27580.1 68414.m03361 F-box family protein similar to F-box p... 27 5.4
At5g65960.1 68418.m08303 expressed protein 26 9.4
At3g54030.1 68416.m05974 protein kinase family protein contains ... 26 9.4
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 273 KLTEREEAAPKMPXRTTLXPWIIFHYFGKHSGCEVIVSIFEHIRE 139
++ +R E PK P ++ +GKH CE + IFE +RE
Sbjct: 424 RIFDRFEPKPKDPVFWN----VMISGYGKHGECESAIEIFELLRE 464
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 225 TLXPWIIFHYFGKHSGCEVIVSIFEHIREICDG 127
T+ +++F KHS CE+ VS E ++ G
Sbjct: 5 TVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37
>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 306 LKAIGFPDDDAIRTEFASKSRDLR 377
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 306 LKAIGFPDDDAIRTEFASKSRDLR 377
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At1g78920.1 68414.m09201 vacuolar-type H+-translocating inorganic
pyrophosphatase (AVPL1) identical to vacuolar-type
H+-translocating inorganic pyrophosphatase GI:6901676
from [Arabidopsis thaliana]
Length = 802
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 173 KLSFPFLSTLERFVTAAIAAMAIVNKQMIVFMFVACVSRILVPI 42
KL+ LS + F AI M +IVF+F C+ L+ I
Sbjct: 40 KLNVRVLSIILLFCFGAIFYMGASTSPIIVFVFTVCIISFLLSI 83
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 136 NLSNVLKNGNDNFTARMFTEVVK 204
NL +LKNG DN A +F +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453
>At1g27580.1 68414.m03361 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; confirmed by FLcDNA GI:16604421; contains
uncharacterized Arabidoppsis domain shared by 33
Arabidopsis proteins;simlar to unknown protein
GB:AAC63676
Length = 364
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 297 EELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYV 422
EE +K + D+D R EF + DLR V+ K N V V
Sbjct: 96 EENVKHMLMDDEDPFRDEFPHAAEDLRGRLWVDDKNGNYVVV 137
>At5g65960.1 68418.m08303 expressed protein
Length = 393
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 340 IASSSGKPIAFKSSSWVSPSEAKAN*ARGGST--ENAEXDNA 221
+++ SG P WVS SE ++ GGST EN +N+
Sbjct: 256 LSAGSGDPWDNIEERWVSASETHSHADAGGSTSQENLHVENS 297
>At3g54030.1 68416.m05974 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 490
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 249 LPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFA 356
L P L D +E+L IG+ DD+ I E +
Sbjct: 338 LTPFGDACLRVDLTAIQEILSKIGYKDDEGIANELS 373
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,942,627
Number of Sequences: 28952
Number of extensions: 170985
Number of successful extensions: 598
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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