Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0181
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    85   3e-18
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   2.1  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   3.8  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    24   5.0  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   5.0  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    24   5.0  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    24   5.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    24   6.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    23   8.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 84.6 bits (200), Expect = 3e-18
 Identities = 43/77 (55%), Positives = 51/77 (66%)
 Frame = +2

Query: 2   VKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQ 181
           VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKEDA 
Sbjct: 12  VKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKEDAA 70

Query: 182 KAYIEIVEGLIASIGLK 232
             YI  V+ L    G+K
Sbjct: 71  SEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 29   DAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHKL-AGTSKEDAQKAYIE 196
            DA LLN+Y +F+Q  + V +A    +  L + +K +    +W        KE A+K++ E
Sbjct: 3316 DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSHAE 3375

Query: 197  IVEGL 211
            + + L
Sbjct: 3376 LFKVL 3380


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  LPTDAQLLNLYAHFKQATV 76
           LP +   ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 102 GLLAGSASPTVACLKWAYKL 43
           G  AG A   ++CL WA++L
Sbjct: 136 GYHAGFAGSAISCLVWAHQL 155


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 5   KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLK 121
           +N    PT  +   L     Q  +G + P N P LL +K
Sbjct: 501 QNNMVFPTSDRDTRLQNSLAQQPIGHSTPHNSPSLLSVK 539


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 396

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 39 SLTCMPISNRPQLEMPIQPI 98
          +LT + +SNR   E PIQP+
Sbjct: 19 ALTTLSLSNRNHEEDPIQPV 38


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 171 SFEVPASLCQASNLALPFKSRRP 103
           S+ +PA + Q  N  +P K+ +P
Sbjct: 30  SYSLPAPVAQKKNAQIPLKASKP 52


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 205 FDDLDVGFLGILLRSAGQFVPSVKFSFTL 119
           +DD++    G L  S G  +P +  +FTL
Sbjct: 476 WDDIESDMYGFLTWSMGSQIPGIITAFTL 504


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 131  KFDAWHKLAGTSKEDAQKAYI 193
            KF+ W ++    K+D  ++YI
Sbjct: 1845 KFEEWRQMQDVVKQDQDRSYI 1865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,309
Number of Sequences: 5004
Number of extensions: 23590
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)