Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0181
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 56 5e-09
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 56 5e-09
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 53 6e-08
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 52 1e-07
01_05_0353 + 21278753-21278884,21279482-21279535,21279912-212799... 27 3.3
01_05_0221 - 19450497-19450586,19450758-19450856,19451059-194512... 27 4.3
09_04_0442 - 17630039-17630782 26 5.7
07_03_0472 - 18519169-18519285,18519561-18519671,18520689-185208... 26 5.7
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 26 5.7
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 26 5.7
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 26 7.6
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 26 7.6
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 56.4 bits (130), Expect = 5e-09
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +2
Query: 5 KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQK 184
K L ++ L LY +KQATVGD + A RPG+ + +AK+DAW + G SKE+A
Sbjct: 15 KTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDAWKAVEGKSKEEAMS 73
Query: 185 AYIEIVEGLI 214
YI V+ L+
Sbjct: 74 DYITKVKQLL 83
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 56.4 bits (130), Expect = 5e-09
Identities = 30/70 (42%), Positives = 42/70 (60%)
Frame = +2
Query: 2 VKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQ 181
VK L ++ L LY +KQATVGD + +RPG+ + +AK+DAW + G SKE+A
Sbjct: 14 VKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDAWKAVEGKSKEEAM 72
Query: 182 KAYIEIVEGL 211
YI V+ L
Sbjct: 73 SDYITKVKQL 82
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 52.8 bits (121), Expect = 6e-08
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +2
Query: 5 KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQK 184
K L ++ L LY +KQATVG RPG+ +LK + K+DAW + G SKE+A
Sbjct: 15 KTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDAWKAVEGKSKEEAMA 73
Query: 185 AYIEIVEGLI 214
YI V+ L+
Sbjct: 74 DYITKVKQLL 83
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 51.6 bits (118), Expect = 1e-07
Identities = 28/65 (43%), Positives = 39/65 (60%)
Frame = +2
Query: 17 ALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQKAYIE 196
++P AQL LY +K AT G A +P L LK +AK++AWHKL E+A + YI
Sbjct: 110 SVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTEEAMQKYIT 167
Query: 197 IVEGL 211
+V+ L
Sbjct: 168 VVDEL 172
>01_05_0353 +
21278753-21278884,21279482-21279535,21279912-21279991,
21280099-21280361,21280837-21280958
Length = 216
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 49 VCPFQTGHSWRCR 87
V P TGH WRCR
Sbjct: 113 VAPHSTGHVWRCR 125
>01_05_0221 -
19450497-19450586,19450758-19450856,19451059-19451209,
19451305-19451374,19451417-19451545,19451848-19451905,
19452037-19452215,19452545-19452944
Length = 391
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 267 CSCIIEN*VFYSLRPMEAMRPSTISM*AFWASSFEVPAS--LCQASNLALPFKSRRPGLL 94
C E +FY+ PM M PST S A +S + S L + LA P + + LL
Sbjct: 105 CLIRFETSIFYNGEPMRIMGPSTNSTSADGKASLQEKTSTYLYEEEALAWPIQGQSSELL 164
>09_04_0442 - 17630039-17630782
Length = 247
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -2
Query: 159 PASLCQASNLALPFK----SRRPGLLAGSASPT 73
PA+ AS+L+ P +RRP + AG+A PT
Sbjct: 29 PAASLSASSLSYPLSPFVSARRPSVNAGAADPT 61
>07_03_0472 -
18519169-18519285,18519561-18519671,18520689-18520816,
18520965-18521147,18521337-18521427
Length = 209
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 123 PFKSRRPGLLAGSASPTVACLKWAYKLRSWA 31
P +RR L SASP+ W Y + SW+
Sbjct: 154 PTPTRRIPLSGASASPSQMDQSWMYGIDSWS 184
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -3
Query: 173 PPSKCRPVCAKRQI*LYPSSLEDQV 99
PP++C P C + L P+++E ++
Sbjct: 21 PPTRCNPGCVRSLAKLLPTAVEQKI 45
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 190 VGFLGILLRSAGQFVPSVKFSFTLQV*KTRSIGWIGISNC 71
V FLG+L A V + K LQ RS+GW + +C
Sbjct: 488 VAFLGLLSTLASSEVGAAKVYELLQGKVYRSLGWSTLFDC 527
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -2
Query: 138 SNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRF 7
+N ALP K P A+P+ A L WA S+ +V R F F
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFF 431
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 159 PASLCQASNLALPFKSRRPGLLAGSASP 76
PASL +A++ A F RRP A S +P
Sbjct: 249 PASLTEAASSAPAFPPRRPNSWAPSPAP 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,748,027
Number of Sequences: 37544
Number of extensions: 160543
Number of successful extensions: 402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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