Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0181
         (322 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               52   8e-08
SB_28191| Best HMM Match : Insulin (HMM E-Value=8.1)                   27   3.4  
SB_12600| Best HMM Match : Insulin (HMM E-Value=8.1)                   27   3.4  
SB_5730| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.4  
SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.9  
SB_29230| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  
SB_3266| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.9  
SB_29185| Best HMM Match : CobU (HMM E-Value=0.76)                     26   7.9  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = +2

Query: 2   VKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKEDAQ 181
           V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH+     +E A 
Sbjct: 24  VRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWHQHGKMPQEKAM 81

Query: 182 KAYIE 196
           K Y++
Sbjct: 82  KIYVQ 86


>SB_28191| Best HMM Match : Insulin (HMM E-Value=8.1)
          Length = 175

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 123 VKLNLTLGTNWPALRRRMPRKPTSRSSKVS*LPSASK 233
           ++  + +GTN P LR R+ R+P  + +K   L  AS+
Sbjct: 134 IRDQIVVGTNSPVLRERLLREPELKLTKTINLCRASE 170


>SB_12600| Best HMM Match : Insulin (HMM E-Value=8.1)
          Length = 175

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 123 VKLNLTLGTNWPALRRRMPRKPTSRSSKVS*LPSASK 233
           ++  + +GTN P LR R+ R+P  + +K   L  AS+
Sbjct: 134 IRDQIVVGTNSPVLRERLLREPELKLTKTINLCRASE 170


>SB_5730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 54  PISNRPQLEMPIQPIDLVF*T*RVKLNLTLGTNWPALRRRMPRKPTSRSS 203
           P+S R  L   I+P D +  T    +N     +W +    +  KP S  S
Sbjct: 3   PVSRRDVLRCKIEPCDYLLHTLSKCVNAAASDDWRSCLANLANKPASACS 52


>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 DAWHKLAGTSKEDAQKAYIEIVEGLI 214
           DAW KL  +SK+D++   + +VE L+
Sbjct: 183 DAWAKLFTSSKKDSRSNILHLVEILL 208


>SB_29230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 VKLNLTLGTNWPALRRRMPRKP 188
           ++  + LGTN P LR R+ R+P
Sbjct: 134 IRDQIVLGTNSPTLRERLLREP 155


>SB_3266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 135 LTLGTNWPALRRRMPRKPTSRSSKVS*LPSASK 233
           + +GTN P LR R+ R+P    +K   L  AS+
Sbjct: 51  IDIGTNSPVLRERLSREPELTLTKTINLCLASE 83


>SB_29185| Best HMM Match : CobU (HMM E-Value=0.76)
          Length = 224

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  HFKQATVGDADPANRPGLLDLKGKAKFDAWHKL 154
           HF  AT+    P  RP  + L+  + F++W+ L
Sbjct: 12  HFTGATLFFEQPIRRPRFVALRQCSLFNSWYNL 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,682,004
Number of Sequences: 59808
Number of extensions: 168259
Number of successful extensions: 357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 425519554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)