Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0180
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0757 - 36042502-36043316,36045105-36045387 34 0.087
08_02_0719 + 20388246-20390756,20391159-20391263 31 0.46
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 31 0.61
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 30 1.4
05_06_0180 + 26173452-26173692,26174456-26174698,26174796-261750... 29 2.5
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 3.3
01_01_0051 + 389051-389623 28 4.3
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 7.5
03_06_0118 + 31795050-31796404,31796513-31797083 27 7.5
03_05_0964 - 29254947-29256183,29256275-29256381 27 7.5
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 10.0
06_01_0518 + 3750996-3751424 27 10.0
03_05_0758 + 27491778-27492088,27492996-27493113 27 10.0
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 27 10.0
>03_06_0757 - 36042502-36043316,36045105-36045387
Length = 365
Score = 33.9 bits (74), Expect = 0.087
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 184 NC*FTVPQRSVESDVKLFIEFI*VHINILIIETGVLIARRASTVALVPNSCSP 26
N FT P RSVE D+ +++ + L+ + L ARR V L P C P
Sbjct: 186 NTYFTTPFRSVEYDIPSYVDLLVSGAAKLLDQVAALGARRIGFVGLPPIGCVP 238
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 31.5 bits (68), Expect = 0.46
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = -1
Query: 518 RRLQFQMSQDVLRQNEVLSQISAIFYLTYVAHRHQSAPRTQVRKIVSLMHMTGLLRSETR 339
RR+ Q+ +D RQN LS++ +F + H + T K++S M G L E
Sbjct: 525 RRMSIQIEEDDFRQNVSLSKLQTLFISNKIPHVPKLLSSTTALKVLS---MQGSLIEEFP 581
Query: 338 TPVPPIASPRGDYSSLRD 285
+ + R Y +LRD
Sbjct: 582 KEIGNLTHLR--YLNLRD 597
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 31.1 bits (67), Expect = 0.61
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 75 IRTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNK 191
IR + I N+F C + N ++ FTS L TV ++ K
Sbjct: 492 IREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIRK 530
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 21 IPGLQEF-GTRATVLARLAIRTPVSIINIFICTYINSINSFTSLSTL 158
IP + F G +A A + +R + N+F+C + N + FTS L
Sbjct: 366 IPDEKRFNGKKALAEASVIVRDHAPLTNLFMCLWFNEVVRFTSRDQL 412
>05_06_0180 +
26173452-26173692,26174456-26174698,26174796-26175009,
26175115-26175194,26175381-26175502,26175950-26176053,
26176457-26176644,26176725-26176924,26177104-26177331
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 75 IRTPVSIINIFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWM 209
IR + I N+F C + N ++ FTS + TV ++ + WM
Sbjct: 406 IREHIPITNLFTCLWFNEVDRFTSRDQISFSTVRDKIRARVG-WM 449
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 180 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 296
Q+ +++C L NW ++ Y H W V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479
>01_01_0051 + 389051-389623
Length = 190
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = -3
Query: 426 TSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRK 247
+S+S + + + S++ +SS +++SSS L RR P P Q+ K+
Sbjct: 101 SSSSESSSSSSSSSSESSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSP 160
Query: 246 NRSIPYDISSLKASNS*GS 190
+ S P S+ +S+S GS
Sbjct: 161 SPSPPSSSSTSSSSSSSGS 179
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 378 SNAYDRASSFGNTNSSSAHCLTT 310
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 197 QLLDAFKLEMSYGI-ERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFVFP 349
+++DA +L +Y I E +L L C P GA+ ++R V Q+ E + FP
Sbjct: 544 KVIDA-RLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFP 594
>03_05_0964 - 29254947-29256183,29256275-29256381
Length = 447
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 317 RQWAELEFVFPNEEARSYALEKRFYVPGSSVPIDV 421
R+W +FP+E+ +S+ + F GS+ +D+
Sbjct: 174 RRWGTRRPIFPSEKPKSFTAHQTFSFQGSAYWVDL 208
>06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -1
Query: 425 HRHQSAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRG-DYSSLRDRANSTPNN 261
H + P+ + +I + + R ET + VPP +PR R RA +P++
Sbjct: 872 HPEEELPQDEAEEIFKKLGLDAGFRLETNSVVPPTPAPRSVRPPPSRRRARRSPSS 927
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 384 RFSNAYDRASSFGNTNSSSAHCLTTRRL 301
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>03_05_0758 + 27491778-27492088,27492996-27493113
Length = 142
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 374 MHMTGLLRSETRTPVPPIASPRGD 303
+H+ G S + P P +A+PRGD
Sbjct: 36 VHLAGGTASSSSAPGPAVATPRGD 59
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 402 PRCRLMSMCNIGQVKNRGYL*QYLVLTKDV 491
P+ R S+CNIG + R L + L++ DV
Sbjct: 400 PKLRDFSLCNIGSIHKRADLAKKLLVLTDV 429
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,938
Number of Sequences: 37544
Number of extensions: 308773
Number of successful extensions: 852
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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