Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0180
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   3.9  
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    28   5.1  
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    27   6.8  
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    27   6.8  
Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    27   9.0  
M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen ...    27   9.0  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 384 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 265
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 384 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 265
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 456 IRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTT 310
           + D L  +CC +  + T    T        D  S  GNT  +   CLT+
Sbjct: 455 VMDLLKKICCDNLQVNTSKNDT--IIDAILDNISESGNTRKTQIACLTS 501


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 221 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 370
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 221 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 370
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 204 WMLLNWKC-RTESSDFFYCHIVWRAVGPVS 290
           W  + W C  T  SD+FYC +  R  G VS
Sbjct: 74  WKPIRWFCLNTTCSDYFYCSMATR-FGSVS 102


>M80650-1|AAA27985.1|  298|Caenorhabditis elegans alpha-collagen
           protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 86  GCPNRETSQHCCPRAEFLQPGDP 18
           G P  + SQ C PR E L PG+P
Sbjct: 196 GAPEHQESQEC-PRGEPLIPGEP 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,422
Number of Sequences: 27780
Number of extensions: 275242
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)