Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0180
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23390.1 68417.m03372 expressed protein   contains Pfam profi...    29   1.6  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    29   1.6  
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b...    28   3.6  
At1g53040.2 68414.m06006 expressed protein contains Pfam profile...    28   3.6  
At1g53040.1 68414.m06005 expressed protein contains Pfam profile...    28   3.6  
At5g42660.1 68418.m05197 expressed protein contains Pfam profile...    28   4.8  
At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4...    28   4.8  
At1g28240.1 68414.m03466 expressed protein                             28   4.8  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    27   6.3  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    27   8.3  
At2g38590.1 68415.m04740 F-box family protein contains Pfam prof...    27   8.3  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    27   8.3  

>At4g23390.1 68417.m03372 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 401

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 261 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 374
           IV+  +   ++  + + W  +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 528 IRPSSSTVPNVTGRPSSKRG-----IVTNIRDFLPDLCCTSTS 415
           +R SSS  P+ +G PS+K       +V NI    P  CC S S
Sbjct: 375 LRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFS 417


>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
           boundaries domain protein 18 (LBD18) identical to LOB
           DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
           by full-length cDNA gi:17227163
          Length = 262

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 408 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 286
           T+ P + +   + YD AS F  T SSSA   T +R F  PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209


>At1g53040.2 68414.m06006 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 75  IRTPVSIINIFICTYINSINSFTSLSTL 158
           IR  + I N+F C + N ++ FTS   L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448


>At1g53040.1 68414.m06005 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 540

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 75  IRTPVSIINIFICTYINSINSFTSLSTL 158
           IR  + I N+F C + N ++ FTS   L
Sbjct: 421 IREHIPITNLFTCVWFNEVDRFTSRDQL 448


>At5g42660.1 68418.m05197 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 463

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 42  GTRATVLARLAIRTPVSIINIFICTYINSINSFTSLSTL 158
           G +A   A + +R    + N+F+C + N +  FTS   L
Sbjct: 383 GKKALSEASVIVREHTPLTNLFMCLWFNEVVRFTSRDQL 421


>At2g44910.1 68415.m05590 homeobox-leucine zipper protein 4 (HB-4) /
           HD-ZIP protein 4 identical to  Homeobox-leucine zipper
           protein ATHB-4 (HD-ZIP protein ATHB-4)  (SP:P92953)
           [Arabidopsis thaliana]
          Length = 318

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 531 TIRPSSSTVPNVTGRPSSKR 472
           T  PS++T P V GRPS +R
Sbjct: 284 TAAPSTTTTPTVVGRPSPQR 303


>At1g28240.1 68414.m03466 expressed protein
          Length = 581

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 75  IRTPVSIINIFICTYINSINSFTSLSTLR*GTV 173
           +R  V I N+F C + N ++ FTS   +   TV
Sbjct: 447 LREHVPISNLFTCLWFNEVDRFTSRDQISFSTV 479


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 519 SSSTVPNVTGRPSSKRGIVTNIRDFLP 439
           +++T P  T +P  K+GI+  I+D LP
Sbjct: 151 ATTTGPATTDQPHEKKGILEKIKDKLP 177


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 318 GNGRNWSSCFRTKKPGHM 371
           G GR  S C++  +PGHM
Sbjct: 123 GGGRGGSDCYKCGEPGHM 140


>At2g38590.1 68415.m04740 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 424

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 532 NDTSLVVYSSKCHRTSFVKTRYCHK 458
           +DT +VV++  C +T +++ RY H+
Sbjct: 127 DDTRVVVWNPYCGQTRWIQLRYSHR 151


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 425 VQHRSGKKSRIFVTIPR-FDEGRPVTFGTVDDEGRI 529
           V   S +KS   +T+P    EGRP+ +   D+EG +
Sbjct: 176 VSRTSSEKSEEELTVPPPKSEGRPIYYHIADEEGHV 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,924,830
Number of Sequences: 28952
Number of extensions: 246296
Number of successful extensions: 662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)