Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0179
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...   225   5e-60
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   7.9  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score =  225 bits (550), Expect = 5e-60
 Identities = 106/170 (62%), Positives = 134/170 (78%)
 Frame = +2

Query: 185 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 364
           R+E DTFG + VP +K +GAQT RS+ NF IGG +ER+P P++ AFG+LK+AAA VN E+
Sbjct: 21  RQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFGVLKRAAASVNREF 80

Query: 365 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILGGK 544
           GL+ K+ADAI QA  +VI G+L  + +FPLV++QTGSGTQSNMN+NEVIANRAI+ILGG 
Sbjct: 81  GLDPKLADAIEQAAQEVIDGRL--DDNFPLVVFQTGSGTQSNMNSNEVIANRAIEILGGT 138

Query: 545 LGSKDPVHPNDHVNKSQSSNDTYPTXMHIAVAMELRDRLMPGLVXLRDTL 694
           LGSK PVHPNDHVN SQSSNDT+PT MHIA  +++   L+P +  L   L
Sbjct: 139 LGSKKPVHPNDHVNMSQSSNDTFPTVMHIASVLQIHTHLLPAMKHLHRAL 188


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 484 LSTGASLPDDEGEVTLAVELPADDVIAGLHDRVGNFLFKSIFD 356
           LS+G SLP  E EVT +     DD +A     +     +S  D
Sbjct: 220 LSSGESLPKKEEEVTKSPSFTLDDSVASNEQTLAQLNIESPVD 262


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 530 ILGGKLGSKDPVHPNDHVNKSQSS 601
           +L   LG+ D  HP++H+ +++SS
Sbjct: 11  LLANTLGNNDENHPSNHIARAKSS 34


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 299 ACVPQFHRSGSSSPNA---RSARHIACHLARPAPQRYL 195
           AC+P+  R     P+     +A  + C LAR AP+ YL
Sbjct: 172 ACIPKL-RERLDDPDTSVVNAAVSVICELARRAPKNYL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,600
Number of Sequences: 5004
Number of extensions: 55361
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)