Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0179
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 229 2e-60
08_01_0421 - 3735155-3736067,3736154-3736176 31 1.1
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 30 2.0
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 2.6
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 29 2.6
03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766 29 3.5
10_01_0206 - 2206359-2209142 28 6.1
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 6.1
10_02_0199 + 6668902-6669293,6669825-6669882 28 8.1
07_01_0130 - 963856-965454 28 8.1
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 28 8.1
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 229 bits (560), Expect = 2e-60
Identities = 112/170 (65%), Positives = 131/170 (77%)
Frame = +2
Query: 185 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 364
R+E+DTFG + VP+DKL+GAQT RS+ NF IGG ERMP P+I AFG+LKK AAKVN+EY
Sbjct: 43 REERDTFGPIRVPNDKLWGAQTQRSLQNFDIGGERERMPVPIIRAFGVLKKCAAKVNMEY 102
Query: 365 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEVIANRAIQILGGK 544
GL+ I AIMQA +V G+L + HFPLVIWQTGSGTQSNMN NEVIANRA +ILG K
Sbjct: 103 GLDPTIGKAIMQAAQEVAEGQL--DDHFPLVIWQTGSGTQSNMNANEVIANRAAEILGHK 160
Query: 545 LGSKDPVHPNDHVNKSQSSNDTYPTXMHIAVAMELRDRLMPGLVXLRDTL 694
G K VHPNDHVN+SQSSNDT+PT MHIA A E+ R +P L L +L
Sbjct: 161 RGEKF-VHPNDHVNRSQSSNDTFPTVMHIAAATEINSRFVPSLQQLHKSL 209
>08_01_0421 - 3735155-3736067,3736154-3736176
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 484 VQHEHERGDCEP--RHTNTGRETGQQGPGASQRPREQVAELER 606
V H+H RGD P R+ N G E QQ P + Q PR+QV R
Sbjct: 73 VHHDH-RGDYPPDQRYGNGGEEARQQQP-SWQPPRDQVTHHPR 113
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 149 NKRNISTTSVTARKEKDTFGELDVPDDKLYGAQTV 253
N IST+S A+K+ ELDVPD+ G +
Sbjct: 352 NDGRISTSSTDAQKDSTHVDELDVPDNNAKGKSLI 386
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 611 TCRSSSATCSRGRWDAPGPCCPVS 540
+C +S +C RGRW AP C P +
Sbjct: 31 SCTTSCRSCGRGRWRAPA-CSPAA 53
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 562 RVLAAQFPAQYLYGAVRNHL-VRVHVGLSTGAS-LPDDE 452
++ PA++ YG VR+++ R G + AS +PDDE
Sbjct: 58 KIYMYDLPAKFTYGVVRSYMAARARAGAAGAASAIPDDE 96
>03_02_0201 + 6363459-6363934,6364020-6364317,6364452-6364766
Length = 362
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 442 SLPPRHLADWLRYSVQHEHERGD-CEPRHTN 531
S P + DWLRY++QH + C P H++
Sbjct: 108 SATPEQINDWLRYAMQHTIKTFKLCSPYHSS 138
>10_01_0206 - 2206359-2209142
Length = 927
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 165 EILRLFIRRKTHL*FLDVLIKDEENLNMDVAIIYNFSSDR*LKT 34
EILR F+ K +L LD + E ++M A+ NF R L T
Sbjct: 271 EILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLIT 314
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 299 ACVPQFHRSGSSSPNARSARHIACHLARPAP 207
A P+ HR G ++P R RH A P P
Sbjct: 10 AATPRRHRHGPATPRRRRRRHAAAVATPPPP 40
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 427 ALPRGSLPPRHLADWLR 477
A PR LPP HL WL+
Sbjct: 118 ATPRPGLPPHHLPSWLK 134
>07_01_0130 - 963856-965454
Length = 532
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 347 KVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQT 469
+V + + ++K+ MQ DV+SG++ +G F +V+W++
Sbjct: 457 RVGVAHEEDQKVPKIDMQ---DVLSGRVAPDGRFDVVLWRS 494
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 347 WRLLSLVYRKRQSRDKACVPQFHRSGSSSPNARSARHIA 231
WR LV + +Q + PQ + +SSP A+SA +A
Sbjct: 307 WRTQPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVA 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,888
Number of Sequences: 37544
Number of extensions: 407062
Number of successful extensions: 1140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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