Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0179
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase prot... 264 3e-71
AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase prot... 48 6e-06
U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.4
Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical p... 30 1.4
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca... 30 1.8
Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical ... 29 4.2
Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical pr... 27 9.6
U51997-6|AAG24064.1| 159|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF016662-5|AAB66059.2| 116|Caenorhabditis elegans Hypothetical ... 27 9.6
>AF025459-5|AAB70982.1| 501|Caenorhabditis elegans Fumarase protein
1, isoform a protein.
Length = 501
Score = 264 bits (648), Expect = 3e-71
Identities = 132/187 (70%), Positives = 147/187 (78%), Gaps = 3/187 (1%)
Frame = +2
Query: 143 LINKRNISTTSVTA---RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVI 313
L RN S T+V RKE+DTFGEL+VP DK YGAQT RS MNF IGG EERMP PVI
Sbjct: 25 LATARNFSRTTVPMAKIRKERDTFGELEVPADKYYGAQTARSQMNFKIGGPEERMPIPVI 84
Query: 314 VAFGILKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNM 493
AFGILKKAAA VN E+GL+KK+ADAI QA D+V+ GKL + HFPLV WQTGSGTQSNM
Sbjct: 85 HAFGILKKAAALVNTEFGLDKKLADAISQAADEVVDGKL--DEHFPLVTWQTGSGTQSNM 142
Query: 494 NTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTXMHIAVAMELRDRLMPGL 673
N NEVI+NRAI+ILGG+LGSK PVHPNDHVN SQSSNDT+PT MHIAV E+ RL+P L
Sbjct: 143 NVNEVISNRAIEILGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAVGREVNSRLLPAL 202
Query: 674 VXLRDTL 694
LR L
Sbjct: 203 KKLRTAL 209
>AF025459-6|AAN63405.1| 328|Caenorhabditis elegans Fumarase protein
1, isoform b protein.
Length = 328
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +2
Query: 590 SQSSNDTYPTXMHIAVAMELRDRLMPGLVXLRDTL 694
SQSSNDT+PT MHIAV E+ RL+P L LR L
Sbjct: 2 SQSSNDTFPTAMHIAVGREVNSRLLPALKKLRTAL 36
>U56963-1|AAB38120.1| 161|Caenorhabditis elegans Hypothetical
protein T13A10.2 protein.
Length = 161
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 563 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 477
P PCC V + RG + P+ CSC Y
Sbjct: 93 PRPCCAVCHDSYASRGPKKPKVCSCLHTY 121
>Z68227-18|CAA92521.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +2
Query: 329 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 508
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 509 IANRAIQILGGKLGSKDP 562
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>Z68220-11|CAA92493.1| 869|Caenorhabditis elegans Hypothetical
protein F49C12.15 protein.
Length = 869
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = +2
Query: 329 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQSNMNTNEV 508
LKK +A N+ LEKK +IS K + ++ TGS + M+ ++
Sbjct: 604 LKKPSASKNLASLLEKKEEARKTDVTSSMISSKPPTSPGTSVYMYNTGSANSTFMSAKDL 663
Query: 509 IANRAIQILGGKLGSKDP 562
R G + SK P
Sbjct: 664 HKERVAASTGPRSASKSP 681
>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
protein 4 protein.
Length = 2325
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 68 IMATSIF-KFSSSLINTSKNYRCVLRLINKRNISTTSVTARKEKDTFGELD 217
++ATS F + +S +N K YRCV R IS S+ K D F D
Sbjct: 72 LIATSKFCEVQASRVNDEKKYRCVARNTVGAAISPPSMVRSKYLDDFDASD 122
>Z81104-2|CAB70254.1| 233|Caenorhabditis elegans Hypothetical
protein M199.4 protein.
Length = 233
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 487 QHEHERGDCEPRHTNTGRETGQQGPGASQ 573
+H ++ DCEP GRE G++GP +Q
Sbjct: 19 RHHYDYYDCEPERGPRGRE-GREGPRGAQ 46
>AL110501-8|CAI06051.1| 175|Caenorhabditis elegans Hypothetical
protein Y79H2A.12 protein.
Length = 175
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 560 PVHPNDHVNKSQSSNDTYPTXMHIAVAMELRDRLMPGLV 676
PV+ + V SNDTYP + + A E DR + GL+
Sbjct: 89 PVYFSSQVASGYESNDTYPNFLGVKTAEE--DRFVIGLL 125
>Z81526-7|CAB04266.2| 330|Caenorhabditis elegans Hypothetical
protein F33H2.8 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 409 IAGLHDRVGNFLFKSIFDIDFGGCFL*YTESDNHG 305
+A H+R G FD F GC L Y + +G
Sbjct: 118 LANSHNRTGELFLVRSFDFLFAGCILFYYSTRQNG 152
>Z73103-2|CAA97425.2| 400|Caenorhabditis elegans Hypothetical
protein C08F8.3 protein.
Length = 400
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +2
Query: 455 VIWQTGSGTQSNMNTNEVIANRAIQILGGKLGSKDPVHPNDHVNKSQSSNDTYPTXMHIA 634
V+ + G GT+++M NE+ A A QI + G V P H N + S+ T ++
Sbjct: 21 VVEKKGDGTRTSMRQNEIYAYSA-QI---RTGDGCMVMPKIHWNSFEPSDWVSCTLEYVN 76
Query: 635 VAMELRDRLM 664
A +++++ M
Sbjct: 77 KANQIKEKEM 86
>U51997-6|AAG24064.1| 159|Caenorhabditis elegans Hypothetical
protein F19G12.1 protein.
Length = 159
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 563 PGPCCPVSRPVFVWRGSQSPRSCSCWTEY 477
P PCC V + RG + P+ SC Y
Sbjct: 91 PRPCCAVCLDSYASRGPKKPKVFSCLHTY 119
>AF016662-5|AAB66059.2| 116|Caenorhabditis elegans Hypothetical
protein C33C12.7 protein.
Length = 116
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 496 VHVGLSTGASLPD-DEGEVTLAVELPADDVIAGLHDRV 386
VH+ + T P D G +TL A + IA HDRV
Sbjct: 8 VHIAMETACGKPPKDMGIITLGDGYEASENIAAHHDRV 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,206,592
Number of Sequences: 27780
Number of extensions: 322991
Number of successful extensions: 888
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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