Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0177
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    29   0.42 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   0.55 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   2.9  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   6.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.0  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.0  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 260  IYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDTNAVSNRAEKSLDSHTTIISLSS 84
            +Y Y  ID C  S    ++  +   V  ++ +  Y +N    +  KS DS+  +  +SS
Sbjct: 1724 VYPYGSIDYCMDSLAQIFVDEIFGEVGVEKDSEDYKSNVKEIKGNKSYDSYEIVARISS 1782


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
 Frame = -3

Query: 248 RKIDTCQFSSKLAYIRA----VSHSVIYKRFTARYDTNAVSNRAEK--SLDSHTTIISLS 87
           +K ++ +   ++A++R+    + H  I   F+ RY T+ + N AEK  + + H  II + 
Sbjct: 576 KKSESSKNKKQIAHLRSELAPLLHEKIRTGFSGRYLTSGLVNMAEKLANEEVHDNIIGMD 635

Query: 86  S*CAAETRSRR 54
           S  A E   +R
Sbjct: 636 SISALEVLQKR 646


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 552 GNDRLVQLHQETETI---KHFLSLKSH 481
           G DRLV LH++ E +    +F S+K+H
Sbjct: 597 GRDRLVCLHEQAENLLDYNNFASIKAH 623


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 481 QILLENIFSKNLIQFYIDDSITSLFSRRGRLRFVSHIVITYTNLERV 341
           Q+L+   F   LI F +DD++ S   R  +  F   +VI   +L R+
Sbjct: 443 QVLVSLSFLDTLISFGLDDNVESSSIREAQHDFPFSMVIIDRDLSRL 489


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -1

Query: 487 KPQILLENIFSKNLIQFYIDDSITSL 410
           +PQI +++  ++ LIQF + D+I S+
Sbjct: 720 QPQIPIDDFINRELIQFSMADNIRSI 745


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 19  YGSPGCRRVEWHLLLRVSAAHQELS 93
           Y +PG R + WH L +V  +  +LS
Sbjct: 73  YHTPGGRLLGWHWLRKVPCSRSDLS 97


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 263  YIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRF 168
            ++YRY ++   Q S +L  + +V+ S +Y  F
Sbjct: 1053 FLYRYNQVYYTQTSRELKRLDSVTRSPLYAHF 1084


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 194 SHSVIYKRFTARYDTNAVSNRAEKSLDSHTTIISLSS 84
           SH++IY  +T+ Y  N+     + S+  H+TI +LS+
Sbjct: 159 SHTLIYSTYTSTYLPNST---IDLSILPHSTISTLST 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,892
Number of Sequences: 5004
Number of extensions: 43709
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)