Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0177
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           28   7.0  
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491...    27   9.2  

>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 211 LTLGQCHIQSFTNASQHVTTLMQFQIELKSHSIV 110
           LT GQC I+SF NAS  +  L QF+I   +  +V
Sbjct: 352 LTDGQCVIESFVNASSDL-GLTQFKISPINRELV 384


>02_05_0967 -
           33148283-33148524,33148602-33148881,33148959-33149151,
           33149244-33149324,33149395-33149520,33149758-33150137,
           33150367-33150394,33150816-33150979,33151920-33152039,
           33152168-33152416
          Length = 620

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 SMRTGTYRFFDIDKYNIDFSIC 283
           S +  TY+ FD+  YN  +SIC
Sbjct: 352 SAQDSTYKVFDLKNYNFLYSIC 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,990
Number of Sequences: 37544
Number of extensions: 245513
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)