Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0177
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67) 30 1.8
SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043) 29 2.3
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 28 7.1
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_57512| Best HMM Match : DUF573 (HMM E-Value=4.7) 27 9.4
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 27 9.4
SB_9279| Best HMM Match : Piwi (HMM E-Value=0) 27 9.4
SB_48041| Best HMM Match : GIY-YIG (HMM E-Value=5.5) 27 9.4
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 187 QSFTNASQHVTTLMQFQIELKSHSIVTRQSFH*ALDVLQKLVVGDATRLACSRGIHSLER 8
+S ++ + QI LK H V + + ++ K DA A R +H +E+
Sbjct: 384 ESHSHTCDECGKVFHSQIYLKRHKTVHVEERNFPCEICNKAYTSDANLKAHKRSVHCIEK 443
Query: 7 RH 2
+H
Sbjct: 444 KH 445
>SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)
Length = 336
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/90 (26%), Positives = 44/90 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + S R + HRNS L + +I S + + + ++I L
Sbjct: 228 TSETYVGLTENEFKTRYRNHTASFRQAKHRNSTELSK-YIWSLKD--NDIEHFISWKI-L 283
Query: 127 KSHSIVTRQSFH*ALDVLQKLVVGDATRLA 38
SHS S L + +KL++ T+L+
Sbjct: 284 SSHSAYNSSSKRYNLCLKEKLIIIRQTKLS 313
>SB_36734| Best HMM Match : SH2 (HMM E-Value=0.00043)
Length = 661
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDTNAVS-NRAEKSLDSHTT 102
CY Y+++ T K Y R V++S YKR R T++ R K L +++T
Sbjct: 152 CYKRGYKRLVTSSTCYKRGYQRLVTYSTCYKRGYQRLVTSSTCYKRGYKRLVTYST 207
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKR---FTARYDTNA 144
CY Y+K+ T K Y R V++S YKR F YD +A
Sbjct: 278 CYKRGYKKLVTSSTCYKRGYKRLVTYSTCYKRGLPFDLYYDKDA 321
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDT-NAVSNRAEKSLDSHTT 102
CY Y+++ T K Y R V++S YKR R T + R K L +++T
Sbjct: 222 CYKRGYKRLVTSSTCYKRGYKRLVTYSTCYKRGYKRLVTYSTCYKRGYKRLVTYST 277
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDT-NAVSNRAEKSLDSHTT 102
CY Y+++ T K Y R V+ S YKR + R T + R K L +++T
Sbjct: 40 CYKRGYKRLVTYSTCYKRGYKRLVTSSTCYKRGSKRLVTYSTCYKRGYKRLVTYST 95
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDTNAVS-NRAEKSLDSHTT 102
CY Y+++ T + Y R V++S YKR R T++ R K L +++T
Sbjct: 194 CYKRGYKRLVTYSTCYRRGYQRLVTYSTCYKRGYKRLVTSSTCYKRGYKRLVTYST 249
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 266 CYIYRYRKIDTCQFSSKLAYIRAVSHSVIYKRFTARYDTNAVS-NRAEKSLDSHTT 102
CY Y+++ T K Y R V++S YKR + T++ R K L +++T
Sbjct: 250 CYKRGYKRLVTYSTCYKRGYKRLVTYSTCYKRGYKKLVTSSTCYKRGYKRLVTYST 305
>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/92 (26%), Positives = 45/92 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + S R + HRNS L + +I S + ++ + ++I L
Sbjct: 256 TSETYVGLTENEFKTRYRNHTASFRHAKHRNSTELSK-YIWSLKD--NNIEHFISWKI-L 311
Query: 127 KSHSIVTRQSFH*ALDVLQKLVVGDATRLACS 32
SHS S L + +KL++ +L+ S
Sbjct: 312 SSHSTYNSSSKRCNLCLKEKLIIIRQPKLSTS 343
>SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = -1
Query: 442 QFYIDDSITSLFSRRGRLRFVSHIVITYTNLERVRDRDI*KYIFVTNKTYLASTNRKIDV 263
++Y +IT R R R+ +H+VIT+T+L +R YI +T+ T L T R
Sbjct: 139 RYYAHAAITHTSLLRTR-RYYAHVVITHTSL--LRTGRYYAYIVITH-TSLLRTRRYYAH 194
Query: 262 IFI 254
+FI
Sbjct: 195 VFI 197
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 531 LHQETETIKHFLSLKSHRFY*KTFSVKISFN-FISTIQSHHYSRVA 397
LH HFL SH TF V F+ + S HH SRVA
Sbjct: 182 LHLTKRVASHFLRYISHHALLPTFRVTSHFSRYTSHHALHHTSRVA 227
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + + S R + HRNS L + +I S + + + ++I L
Sbjct: 363 TSETYVGLTENEFKIRYRNHTASFRHAKHRNSTELSK-YIWSLKD--NDIEHFISWKI-L 418
Query: 127 KSHSIVTRQSFH*ALDVLQKLVV 59
SHS S L + +KL++
Sbjct: 419 SSHSTYNSSSKRCNLCLNKKLII 441
>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + S R + HRNS L + +I S + + + ++I L
Sbjct: 444 TSETYVGLTENEFKTRYRNHTASFRHAKHRNSTELSK-YIWSLKD--NDIEDFISWKI-L 499
Query: 127 KSHSIVTRQSFH*ALDVLQKLVV 59
SHS S L + +KL++
Sbjct: 500 SSHSTYNSSSKRCNLCLKEKLII 522
>SB_57512| Best HMM Match : DUF573 (HMM E-Value=4.7)
Length = 252
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + S R + HRNS L + +I S + + + ++I L
Sbjct: 144 TSETYVGLTENEFKTRYRNHTASFRHAKHRNSTELSK-YIWSLKD--NDIEHFISWKI-L 199
Query: 127 KSHSIVTRQSFH*ALDVLQKLVV 59
SHS S L + +KL++
Sbjct: 200 SSHSAYNSSSKRCNLCLKEKLII 222
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = -1
Query: 244 KSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIELKSHSIVTRQS 98
+++R RN L +C F +H+ T+ + +++ +H++ T +S
Sbjct: 138 ETVRQIKKRNPKMLVECLTPDFRGNREHIRTVAESGLDVYAHNVETVKS 186
>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
Length = 941
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Frame = -3
Query: 233 CQFSSKLAYIR------AVSHSVIYKRFTARYDTNAVSNR 132
CQ++ KLA++R VS S I +F + + T+AV+N+
Sbjct: 742 CQYAHKLAFLRIIHLPSTVSASEIVLKFFSEWGTDAVNNQ 781
>SB_48041| Best HMM Match : GIY-YIG (HMM E-Value=5.5)
Length = 177
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/83 (26%), Positives = 40/83 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + + S R + HRNS L + +I S + + + ++I L
Sbjct: 69 TSETYVGLTENEFKTRYRNHTASFRHAKHRNSTELSK-YIWSLKD--NDIDHFISWKI-L 124
Query: 127 KSHSIVTRQSFH*ALDVLQKLVV 59
SHS S L + +KL++
Sbjct: 125 SSHSAYNSSSKRCNLCLKEKLII 147
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = -1
Query: 307 TNKTYLASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
T++TY+ T + + S R + HRNS L + ++ S + ++ + ++I L
Sbjct: 180 TSETYVGLTENDFKTRYRNHTASFRHAKHRNSTELSK-YVWSLKD--NNIVHFISWKI-L 235
Query: 127 KSHSIVTRQSFH*ALDVLQKLVV 59
SHS S L + +KL++
Sbjct: 236 SSHSAYNSSSKRCNLCLKEKLII 258
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,110
Number of Sequences: 59808
Number of extensions: 317632
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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