Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0177
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10670.1 68417.m01743 transcription elongation factor-related...    29   1.9  
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    29   1.9  
At3g47250.3 68416.m05132 expressed protein contains Pfam profile...    28   4.4  
At3g47250.2 68416.m05131 expressed protein contains Pfam profile...    28   4.4  
At3g47250.1 68416.m05130 expressed protein contains Pfam profile...    28   4.4  
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro...    27   7.7  

>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -1

Query: 289 ASTNRKIDVIFIDIEKSIRASSHRNSLTLGQCHIQSFTNASQHVTTLMQFQIEL 128
           ++TN ++DV+F +I+ +    + +   TL   H+ +        T  +QF +E+
Sbjct: 149 STTNERVDVLFANIKHAFFQPAEKEMTTLLHFHLHNHIMVGTKKTKDVQFYVEV 202


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 466 NIFSKNLIQFYIDDSITSLFSRRGRLRFVSHIVITYTNLERVR 338
           N++ KNLI+   DD + +LFS+ G    VS +V+    + R R
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGT---VSSVVVMRDGMGRSR 242


>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 553 RQRSPSAVTSRNRNNKALFES*KPQILLENIFSKNLIQFYIDDSITSLFSRRGRLRFVS 377
           RQRS  +V S  + N  L  S KP ILLE+    +   F I DS+  +  +  + + VS
Sbjct: 28  RQRSERSVVSHIKRN--LQSSGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVS 84


>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 553 RQRSPSAVTSRNRNNKALFES*KPQILLENIFSKNLIQFYIDDSITSLFSRRGRLRFVS 377
           RQRS  +V S  + N  L  S KP ILLE+    +   F I DS+  +  +  + + VS
Sbjct: 28  RQRSERSVVSHIKRN--LQSSGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVS 84


>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -1

Query: 553 RQRSPSAVTSRNRNNKALFES*KPQILLENIFSKNLIQFYIDDSITSLFSRRGRLRFVS 377
           RQRS  +V S  + N  L  S KP ILLE+    +   F I DS+  +  +  + + VS
Sbjct: 28  RQRSERSVVSHIKRN--LQSSGKPLILLESAGKASCCIFRIPDSLAEVNPKAYKPKVVS 84


>At1g04160.1 68414.m00406 myosin family protein contains Pfam
            profiles: PF02736 myosin N-terminal SH3-like domain,
            PF00063 myosin head (motor domain), PF00612 IQ
            calmodulin-binding motif, PF01843: DIL domain
          Length = 1500

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -2

Query: 258  LSISKNRYVPVLIETRLH*GSVTFSHLQTLHSTL--RH*CSFKS 133
            L+I K+ YVP+++  ++H  + +F ++Q  +S L  +  C+F +
Sbjct: 1308 LAILKDNYVPLVLIQKIHTQTFSFVNVQLFNSLLLRKECCTFSN 1351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,946
Number of Sequences: 28952
Number of extensions: 215247
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)