Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0176
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.8  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.4  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 MIHKLYLNWYKTRSALQITINTIKLHSCY 246
           ++H L LNW      L + +  + L SCY
Sbjct: 243 VVHTLVLNWNTIEPKLFLKLAKVALASCY 271


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 172 IYVSFYLFIS*CVISTTLASMSRQHALRDI 83
           ++   Y ++S C++    A ++ Q ALRD+
Sbjct: 28  VHAQLYPYVSDCMVMHRKAPINEQEALRDV 57


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -1

Query: 515 CLSIAIKQFSTRSKVGVLCYPFLLLI 438
           CL + +++F  R  + ++CYP   ++
Sbjct: 12  CLFVCLERFQWRGAIFLVCYPLYCVV 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,988
Number of Sequences: 5004
Number of extensions: 49906
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)