Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0176
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14034| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  

>SB_14034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 233 NFIVFIVICRAERVLYQFKYNLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYFFNI 54
           N+++ I +       YQ+ Y L I +         YN    +    T+  ++++NY   I
Sbjct: 28  NYLLLICVQGTAASFYQYNYLLMIFVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLI 87

Query: 53  CV 48
           CV
Sbjct: 88  CV 89



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 233 NFIVFIVICRAERVLYQFKYNLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYFFNI 54
           N+++ I +       YQ+ Y L I +         YN    +    T+  ++++NY   I
Sbjct: 46  NYLLMIFVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLI 105

Query: 53  CV 48
           CV
Sbjct: 106 CV 107



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 233 NFIVFIVICRAERVLYQFKYNLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYFFNI 54
           N+++ I +       YQ+ Y L I +         YN    +    T+  ++++NY   I
Sbjct: 64  NYLLLICVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLI 123

Query: 53  CV 48
           CV
Sbjct: 124 CV 125



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 233 NFIVFIVICRAERVLYQFKYNLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYFFNI 54
           N+++ I +       YQ+ Y L I +         YN    +    T+  ++++NY   I
Sbjct: 82  NYLLLICVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLICVQGTAASFYQYNYLLLI 141

Query: 53  CV 48
           CV
Sbjct: 142 CV 143



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -1

Query: 233 NFIVFIVICRAERVLYQFKYNLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYFFNI 54
           N+++ I +       YQ+ Y L I +         YN    +    T+  ++++NY   I
Sbjct: 100 NYLLLICVQSTAASFYQYNYLLLICVQGTAASFYQYNYLLLICVQGTAASFYQYNYLLLI 159

Query: 53  CV 48
           CV
Sbjct: 160 CV 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,483
Number of Sequences: 59808
Number of extensions: 366100
Number of successful extensions: 685
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)