Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0176
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical...    31   0.63 
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe...    28   5.9  
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel...    28   5.9  
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel...    28   5.9  
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel...    28   5.9  
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel...    28   5.9  
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag...    28   5.9  
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu...    28   5.9  
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu...    28   5.9  
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu...    28   5.9  
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen...    28   5.9  
AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    27   7.7  

>AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical
           protein D1007.10b protein.
          Length = 399

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 292 ASTCVCSKTPYHQ*DNNNYVIL-LYLSLFAELSVSCTNLNIIYVSFYLFIS*CVIST 125
           A  C C   P+ Q DN +Y+    Y+     L   CT+L  ++  +Y FI+ C ++T
Sbjct: 164 AVLCFCIVPPFAQTDNKHYIDFGEYVRDTFALRSRCTDLT-LFACWYCFIAICHVAT 219


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.1 protein.
          Length = 1037

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 332 YIELGFRTNISKCVSVILDAYELRYQL 412
           ++EL FR++ + C SV+LDA E+RY+L
Sbjct: 850 FLELRFRSS-TDCRSVLLDAKEIRYEL 875


>Z81124-7|CAB03376.1|  334|Caenorhabditis elegans Hypothetical
           protein T21B4.9 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = -2

Query: 352 SKSQFYIRLTHPSSCNVLLGASTCVCSKTPYHQ*DNNNYVILLYLSLFAELSVSCTNLNI 173
           +K++  I  T P         ST V +  PY +          +++   +++   + L +
Sbjct: 175 NKAKLDILKTFPCPTKEFFATSTTVFTIDPYWE---------TFIANSFKITRLVSGLQV 225

Query: 172 IYVSFYLFIS*CVISTTLASMSRQHALRD-IGLDLITFLTFVFI 44
           I+ S       C+  TT++  +RQ+ +R  IGL + TF+  + +
Sbjct: 226 IFFSSCCIYYLCISKTTISLQTRQYQIRSFIGLIIQTFIPILLV 269


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 276 APKHPITNKIITTM*FYCIYRYLQS*ACLVPI 181
           AP+H I +K+++ + + C+Y  L   A +VP+
Sbjct: 411 APQHDIPSKVVSGVSYTCLYNLLDFGAGVVPV 442


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 276 APKHPITNKIITTM*FYCIYRYLQS*ACLVPI 181
           AP+H I +K+++ + + C+Y  L   A +VP+
Sbjct: 476 APQHDIPSKVVSGVSYTCLYNLLDFGAGVVPV 507


>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform f protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform c protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform a protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform d protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform e protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
           sensitive calciumchannel alpha1 subunit isoform D
           protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform C protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform B protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform A protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
           voltage-dependent calcium channelalpha13 subunit
           protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 173 NLCIILFVY*LMCNLYNLGFYVTAACTSRYWFRFNYF 63
           N   + F + ++  +  LGFY  AA  S  W R ++F
Sbjct: 172 NCIFVYFAFEMVIKIMALGFYGPAAYMSDTWNRLDFF 208


>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 316 SSCNVLLGASTCVCSKTPYHQ*DNNNYVILLYLSLFAELSVSCTNLNIIYVSFYL 152
           S  N  LG    +C   P+   DN N +  L+ SLF    V    L++ +  +++
Sbjct: 562 SQVNCFLG----ICGMIPFFSGDNPNQIYRLFTSLFIHAGVIHLALSMAFQMYFM 612


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,572
Number of Sequences: 27780
Number of extensions: 276790
Number of successful extensions: 529
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)