Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0176
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 549 NYSIPSGLCASLSIDSD 499
           NYS  S +CA L+I +D
Sbjct: 193 NYSADSAMCAMLTIYAD 209



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 526 QSAWY*VVCCSTRRAGRRAHWAS 594
           ++A+   +CC TR  GRR+ W +
Sbjct: 336 RNAFKQTICCKTRIIGRRS-WVT 357


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 190 CTNLNIIYVSFYLFIS*CVISTTLA 116
           C N+ +    F+L IS  + ST+LA
Sbjct: 270 CINILLSQTMFFLLISEIIPSTSLA 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,174
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)