Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0175
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.9  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.9  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 406 DTEMTTQSVASQLELQRLHTGRT 474
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 406 DTEMTTQSVASQLELQRLHTGRT 474
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 406 DTEMTTQSVASQLELQRLHTGRT 474
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 318 SGSCVSS*NNAVCVYYTNNCSTGL 247
           +G C    N   C +  N+CS G+
Sbjct: 499 NGRCDEECNTYACEFDGNDCSLGI 522


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 418 SFQCQLLFLLHNNTCWMLSSGFFGSFC 338
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 418 SFQCQLLFLLHNNTCWMLSSGFFGSFC 338
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,990
Number of Sequences: 336
Number of extensions: 2843
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)