Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0175
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 200 7e-52
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 80 2e-15
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 79 3e-15
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 54 1e-07
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 48 4e-06
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 44 1e-04
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 38 0.008
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 36 0.025
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 33 0.13
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 33 0.23
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 6.5
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 8.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 8.6
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 200 bits (488), Expect = 7e-52
Identities = 91/144 (63%), Positives = 110/144 (76%)
Frame = +1
Query: 166 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 345
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRATE +V+DKN
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATEGPIVADKN 68
Query: 346 CQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY 525
C+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR V T+ TLLK LF Y
Sbjct: 69 CEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSY 128
Query: 526 QGHIGAALVLGGVDRTGPHIYCIY 597
QGH+ AALVLGGVD TGPH++ +Y
Sbjct: 129 QGHVSAALVLGGVDVTGPHLHTVY 152
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Frame = +1
Query: 229 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 408
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAAD 76
Query: 409 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 585
T++ ++ V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 586 YCI 594
+ +
Sbjct: 137 FSV 139
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 79.0 bits (186), Expect = 3e-15
Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +1
Query: 229 PAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 408
P + GTTIVG+ Y GV+L AD+R + V+++ KI L N+Y C +G+AAD
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAAD 76
Query: 409 TEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHI 585
T++ + V L + G+ V+ AA L++ + ++ + + A +++GG D+ G I
Sbjct: 77 TQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQI 136
Query: 586 YCI 594
+ +
Sbjct: 137 FSV 139
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 53.6 bits (123), Expect = 1e-07
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A KA T+VGI DG++LG + T ++ N +++H + + AG AAD
Sbjct: 27 AGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSN-RRLHSVHRHSGLAVAGLAADG 85
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKR-----MLFRYQGHIGAALVLGGVDRTG 576
S+ G +PV+ A + L+ + G ++LGG DR G
Sbjct: 86 RQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDG 145
Query: 577 PHIYCI 594
P +Y I
Sbjct: 146 PQLYMI 151
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 48.4 bits (110), Expect = 4e-06
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A K G+T +G+ DGV+L + R T + ++ + +KI + ++ C +G AD
Sbjct: 40 AIEAIKLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADA 98
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-QGH-------IGAALVLGGVD 567
+ + + R G + VE+ + + R+ +G G +L++ G D
Sbjct: 99 RTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHD 158
Query: 568 RTGPHIY 588
GP +Y
Sbjct: 159 ENGPSLY 165
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVV--SDKNCQKIHY------LASNMYCC 387
A KA T+VGI DG++LG + T ++ S++ +H+ + N+
Sbjct: 27 ATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLDIILINVMAV 86
Query: 388 GAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR-----MLFRYQGHIGAALV 552
AG AAD S+ G + V+ A + L+ + G ++
Sbjct: 87 -AGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVI 145
Query: 553 LGGVDRTGPHIYCI 594
LGG DR GP +Y I
Sbjct: 146 LGGYDRDGPQLYMI 159
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/79 (25%), Positives = 38/79 (48%)
Frame = +1
Query: 262 IVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQ 441
++G++ D ++ ADT A ++ +V + K+ L S+ +G D T+ +
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKN 63
Query: 442 LELQRLHTGRTVPVETAAT 498
L L + +P+ TAAT
Sbjct: 64 LHLYQFR--NNIPLSTAAT 80
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 35.9 bits (79), Expect = 0.025
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 250 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD-TEMTTQ 426
TG++I+ + Y DGVI+ +DT A+ + + K+ ++I + + +G +D E+
Sbjct: 368 TGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEILRY 427
Query: 427 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH---IGAALVLGGVDRTGP 579
L G ++ + + L R+++ + + +LV+GGV + GP
Sbjct: 428 LDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGV-KKGP 480
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A + G VG+ +D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 23 ALEAVRKGNAAVGVRGSDTVVLGVEKKSTPK-LQDSRSVRKIASLDTHIALACAGLKADA 81
Query: 412 EMTTQSVASQLELQRLHTGRTVPVE 486
+ + + RL V VE
Sbjct: 82 RVLINRARVECQSHRLTVEDAVTVE 106
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/85 (25%), Positives = 39/85 (45%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A + G VG+ D V+LG + ++T + ++ +KI L +++ AG AD
Sbjct: 93 ALEAVRKGNAAVGVRGTDTVVLGVEKKSTPK-LQDSRSMRKIASLDTHIALACAGLKADA 151
Query: 412 EMTTQSVASQLELQRLHTGRTVPVE 486
+ + + RL V VE
Sbjct: 152 RVLINRARVECQSHRLTVEDPVTVE 176
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 503 SSVAAVSTGTVRPVCKRCNS 444
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 330 CLGQKLPKNPLLSIQHVLLWSRNSS*H*NDNTICCFTIGVAALTYWTYCTC 482
C G K P + S ++ + + + N C +I + LT++++CTC
Sbjct: 545 CFGVKHPSDKSNSQTYMSISLQGCHKNCNQKGACHSSIDESGLTFYSFCTC 595
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 447 VAALTYWTYCTCRNCCH 497
V L +WTYC C NC H
Sbjct: 426 VVLLDFWTYC-CINCMH 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,429,748
Number of Sequences: 37544
Number of extensions: 297423
Number of successful extensions: 702
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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