Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0175
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 36 0.025
SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 33 0.23
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 28 6.6
SB_14780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +1
Query: 253 GTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQ 426
GTT + + GVI+ D+RAT + ++ + +K+ + N Y G AG AAD +
Sbjct: 28 GTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKV--IEINPYLLGTMAGGAADCSFWER 85
Query: 427 SVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALV 552
+A Q + L + V A+ +L M++ Y+G +G ++V
Sbjct: 86 LLAKQCRIYELRNKERISVAAASKILANMVYYYKG-MGLSMV 126
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 244 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAAD 408
T TGT+++GI + GV++ ADT + ++ +N ++ + N AG AD
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYAD 926
>SB_50062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 211 LAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQ 351
L + G P P + G VG I A G +L + TRA V++ NC+
Sbjct: 84 LKRLGIPPPLLSMGGAEFVGAIRARGGLLFSKTRAARGRQVANVNCE 130
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 32.7 bits (71), Expect = 0.23
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A K G+T VG+ + V+LG + +A + + +KI L ++ AG AD
Sbjct: 24 AQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMAFAGLTADA 82
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 576
+ + + +L V +E + + RY + G + ++ G D G
Sbjct: 83 RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDG 142
Query: 577 -PHIY 588
P +Y
Sbjct: 143 TPRLY 147
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 406 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 534
D + V S E+ RLHT GR+ PVE LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 385 CGAGTAADTEMTTQSVASQLELQR 456
C GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +1
Query: 349 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 519
QK+H + CC + LE+ +H+G +PVE L+ +L
Sbjct: 82 QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141
Query: 520 RYQGHIGAALV 552
+ GH G ++
Sbjct: 142 QESGHDGVTML 152
>SB_14780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 226 FPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKN 345
F PK KT TT+ + + +G TR ++ T+ S N
Sbjct: 40 FNTPKNKKTNTTLTRAQNSSNLAIGTCTRTSQYTIESKPN 79
>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 226 FPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQK 354
F PK KT TT+ + + +G TR + T KN K
Sbjct: 41 FNTPKNKKTNTTLTRAQNSSNLAIGTCTRTGQYTRTDQKNLDK 83
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 391 AGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 537
+G + +TT SVASQL+ + +T RT+ + AT + M+ GH+
Sbjct: 753 SGQVPSSGLTTSSVASQLQ-TKTNTVRTISRPSTATTVS-MVRTLPGHL 799
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,578
Number of Sequences: 59808
Number of extensions: 338142
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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