Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0175
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   6.9  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/60 (21%), Positives = 25/60 (41%)
 Frame = +1

Query: 235 PKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTE 414
           P+ TK           DG++  A +  T+N   S  +   ++Y+ +  +  G   A D +
Sbjct: 232 PRYTKYTINDESFSLQDGILGMALSHKTQNLYYSAMSSHNLNYVNTKQFTQGKFQANDIQ 291


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 471 YCTCRNCCHTAETNAI 518
           YCTC  C  TA    +
Sbjct: 3   YCTCEKCKITANRQQV 18


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 597 INAVNMRTGSVNTSQNQSSPYMALIAK*HSFQQCGSSFYRYSTSSM 460
           ++A  +   +VN +Q  +SP     +  HS     +S    +TSSM
Sbjct: 43  LSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSM 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,345
Number of Sequences: 438
Number of extensions: 3337
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)