Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0174
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    28   1.0  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   2.4  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    26   5.5  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 126 VYNMRYCPYAQRTILALNAKQIDYEVVNIDLIDKPE----WLTTKSAFAKVPAIEI 281
           V+   YCPY   T   +  K+I  +V  IDL++  +    +L  K+    VP I I
Sbjct: 19  VFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFI 74


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 417 IQSLFIKILKFSDTVNEEHVAAYHKALDFIQEQLKNRGTVF 539
           +Q  F+  L  S   N E+  A  KALD  +++++NR  VF
Sbjct: 110 LQEEFMDYLNNSFLANLENSLAEFKALDVKEKKMENRRLVF 150


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 351 PLLPQDPLKKALDKIIVEASAPIQSLFIKILKFS 452
           P+L ++PLK A D  I+E+ + I ++  ++++ S
Sbjct: 135 PVLSEEPLKGASDTQILESDSQIVAMIKELIETS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,644
Number of Sequences: 5004
Number of extensions: 50857
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)