Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0174
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 65  VDISAVLNCRHISKWYTST 9
           VDIS ++N R+ +K YTS+
Sbjct: 516 VDISKLVNKRNNAKIYTSS 534


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 336 PHLNIQLSLSFRKWS 292
           PH N    L+ RKWS
Sbjct: 109 PHRNSDRDLNIRKWS 123


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 185
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 185
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 185
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 208 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 93  DPLPPFNGKLRVYNMRYCPYAQRTILALNAK 185
           DPL P +  LR+Y      Y  R  L L+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 650 RILRRFKSHSFIMCXC 603
           + L R+++H F +C C
Sbjct: 734 QFLCRYEAHCFALCHC 749


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 RVYNMRYCPYAQRTILALNAKQID 194
           R + +RY PY QR  +  +  ++D
Sbjct: 462 RPFEVRYDPYTQRVEILDSVDRLD 485


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 NAKQIDYEVVNIDLIDKP 230
           N+K++ Y ++NI+ I  P
Sbjct: 319 NSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 NAKQIDYEVVNIDLIDKP 230
           N+K++ Y ++NI+ I  P
Sbjct: 330 NSKKLYYNIINIEQIPVP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,238
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)