Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0173
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    35   0.008
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   6.7  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo...    25   8.8  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
 Frame = +2

Query: 188 MSLQWTIIATFLYTEIAVVLLLTLPIASPSR---WQKFFKSKFLAYISGQASIYFXXXXX 358
           M++ + I+   L  EI   ++L+LP+    R         S F   +     I       
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPLPLKVRRAILNAISNSPFAGRVKHVLKITIICILI 60

Query: 359 XXXXXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRL 538
                    +R  ++Y     +      A        F AQRN Y+ G ALFL +V+ R 
Sbjct: 61  LFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVNRY 120

Query: 539 VQMISQLATLLAQSEANFRQAQSATTT 619
              +   A + AQ +    Q Q   +T
Sbjct: 121 YLALE--AMIAAQDKMQALQTQVEAST 145


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 253 NFADSQSEQMAEVLQ-IEISSLHKRAGIYLFSDSHW 357
           N  +   E +A  LQ IE+ S+ +R  +Y   D +W
Sbjct: 22  NEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENW 57


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 218 TSR*LSIADS*FHYFFNTVISYTMQQTIVE 129
           T R +SI D    + F T   YTM+Q  VE
Sbjct: 196 TERLISIPDDEVEFCFLTWFEYTMEQNSVE 225


>SPAC20G4.04c |hus1||checkpoint clamp complex protein
           Hus1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 184 NHESAMDNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSDSH 354
           N E       D+S +  ++R P  F   + +    V  ++ISS+ KR  I  F + H
Sbjct: 204 NPELDPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRV-IACFCEGH 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,652
Number of Sequences: 5004
Number of extensions: 45467
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)