Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0173
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05)                  29   4.0  
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)            29   4.0  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             27   9.3  

>SB_31998| Best HMM Match : GATase (HMM E-Value=4e-05)
          Length = 463

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 271 SEQMAEVLQIEISSLHKRAGIYLFSDS 351
           SE+M EVL++ + S  KR GI + SD+
Sbjct: 208 SEEMNEVLKMSVISTSKRIGIVICSDA 234


>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
          Length = 1774

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 461 CYLAFRRRDAGGLTVQYLNIFASHELHLADIILAR 357
           CYL ++ RD+  + + +LN F   E+     I+A+
Sbjct: 714 CYLFYKERDSSKVLIDHLNDFGGTEIEKTTPIVAK 748


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 202 DNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKRAGIYLFSD 348
           D     ++Y  R RPP  +A +  +     L +EI  + +RA  ++ +D
Sbjct: 591 DTKEKEAVYVGRVRPPLEYASAIWDPHTSKLIVEIEKVQRRAARFVTAD 639


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,012,055
Number of Sequences: 59808
Number of extensions: 335517
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)