Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0173
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.     123   9e-29
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...   123   9e-29
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score =  123 bits (297), Expect = 9e-29
 Identities = 63/144 (43%), Positives = 86/144 (59%)
 Frame = +2

Query: 188 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 367
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 368 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 547
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 548 ISQLATLLAQSEANFRQAQSATTT 619
           + + A L A SEA  RQA+SAT T
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKT 144


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score =  123 bits (297), Expect = 9e-29
 Identities = 63/144 (43%), Positives = 86/144 (59%)
 Frame = +2

Query: 188 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYISGQASIYFXXXXXXXX 367
           M+LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++  A IY         
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 368 XXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQM 547
               D +RE  KY+ +E    +  +++   +MRLFRAQRN YISGFAL L +VI+R++ +
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 548 ISQLATLLAQSEANFRQAQSATTT 619
           + + A L A SEA  RQA+SAT T
Sbjct: 121 LGRAAQLEAASEAAMRQAESATKT 144


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +2

Query: 404  YSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRRLVQMISQLATLLAQSE 583
            ++  EPSD+   D       +LF    N Y++ +A + L +    V + S  +T L    
Sbjct: 5426 FAGAEPSDYGRADDHDDAMRKLFVMNMNSYLASYASYCLDLKGEAVSVYSACSTALVAVA 5485

Query: 584  ANFRQAQSAT 613
               +  QS +
Sbjct: 5486 NAVKSIQSGS 5495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,835
Number of Sequences: 27780
Number of extensions: 260053
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)