Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0172
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    32   0.028
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   0.78 
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   1.8  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    25   2.4  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   3.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   4.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    24   7.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    23   9.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    23   9.6  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    23   9.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   9.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   9.6  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.9 bits (69), Expect = 0.028
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 66  HTKIIPAHKYVLATASSVFYAMFYGGLAECKQEIEVPDVEPSAFLA--LLKYIYCDEIQL 239
           +T   P H+ ++      F  M  G   E  QE+ V  +  S+ +   +LK++Y D+  +
Sbjct: 313 YTHRYPVHRAIMCRCE-YFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLYTDKTDI 371

Query: 240 EADTVLSTLYVA 275
             +  L  +YVA
Sbjct: 372 APELALDVVYVA 383


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 111 SSVFYAMFYGGLAECKQEIEVPDVEPSAFLALLKYIYCDEI 233
           SSV   ++   + +    I V D+ P A   LL Y+Y D +
Sbjct: 654 SSVSNIIYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTL 694


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 211 SIFTVMKSNWRQILYYQLSM*PKNILYLIWL 303
           S+   + ++W  +L+  L   P  I+YLIWL
Sbjct: 38  SVSLTLTASWYTVLWAFLPFWPFLIVYLIWL 68


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 240 EADTVLSTLYVAKKYIVPHLAK 305
           +   VL   Y+ ++Y++PH+AK
Sbjct: 100 DVSLVLRGNYLTQRYVIPHMAK 121


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 118 TELAVANTYLCAGIIFVCPGAPTIKV--ISDISWLLNIAL 5
           TEL+V +T    G+ + CPG   + V    +  W+L I++
Sbjct: 264 TELSVFSTSGYLGLQYECPGMARVPVEGTDEYKWVLFISI 303


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 283 ILYLIWLRHVSIIWK 327
           ILYL+W   ++++WK
Sbjct: 67  ILYLLWFSTLTLLWK 81


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 338 CETSFQIIDTCLSQMRYNIF 279
           CE S+ ++ TC S  R+ +F
Sbjct: 341 CEVSYNLLLTCRSSNRFRLF 360


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 259 QLSM*PKNILYLIWLRHVSIIWKLVS 336
           ++++ PK  L+++W  H  ++W++ S
Sbjct: 342 RMAVAPKARLFMLWNDHEVLLWRIGS 367


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 96  VLATASSVFYAMFYGGLAECKQEIEV 173
           V      +FY M +   A  KQEIEV
Sbjct: 479 VFEVCCDIFYLMVFSLRAHFKQEIEV 504


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 132 FYGGLAECKQEIEVPD 179
           FYG LAE  QE+ + D
Sbjct: 518 FYGKLAESVQEVSIAD 533


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 255 IQYLPPVGFHHSKYTLVKQGTQMALHLEPQFLVYILPNLHK 133
           I  L  + F+H++++ + +  +MA+   P  +VY+    H+
Sbjct: 158 ILLLSDLVFNHTEHSKLIKSCKMAIEGNPNAVVYVFFTHHR 198


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 86   CWYNLCVSW 60
            CWYN+  SW
Sbjct: 1018 CWYNILFSW 1026


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 247  SASSWISSQ*IYFSKARNADGSTSGT 170
            SASSW SS  +  S A +A GS++ +
Sbjct: 952  SASSWSSSSEVDPSTAASATGSSTSS 977


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,131
Number of Sequences: 5004
Number of extensions: 29815
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)