Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0171
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    28   2.3  
03_02_0192 + 6295239-6295279,6295548-6295639,6295839-6296024,629...    27   3.9  
04_04_0347 + 24564589-24565296                                         26   9.1  

>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 336 CLVLHGRHPYRRVHRPDHDLR*I----D*VRALATCRYPDHRGWILALRDSHLFHH 181
           C++  G H  R++  P + ++ +    D V  + +C YPDH   IL L + +   H
Sbjct: 526 CIMCGGDHLLRKLGLPRNHVQSVTMHRDIVPRVFSCNYPDHVANILKLANGNFRSH 581


>03_02_0192 +
           6295239-6295279,6295548-6295639,6295839-6296024,
           6296531-6296672,6296729-6296849
          Length = 193

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 336 CLVLHGRHPYRRVHRPDHDL 277
           CL   G+H +R+ H   HDL
Sbjct: 166 CLPFRGKHKFRKCHSQRHDL 185


>04_04_0347 + 24564589-24565296
          Length = 235

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 195 HLFHHGHHVYRH 160
           H  HHGHH +RH
Sbjct: 95  HHHHHGHHHHRH 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,776,638
Number of Sequences: 37544
Number of extensions: 83170
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)