Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0171
         (345 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        27   5.4  
SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)           26   7.1  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.4  

>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 216 ILALRDSHLFHHGHHVYRHT*C 151
           I+ +  SH  HH HH ++H  C
Sbjct: 105 IIIITSSHHHHHHHHHHQHRGC 126


>SB_49443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 19  CRNSARGCDCVINNC 63
           C N A+ C+CV  NC
Sbjct: 327 CDNCAKACECVSENC 341


>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
          Length = 362

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 2   LVDPRAAGIRHEAATVLSIIA*FKRNIIATKVPTLNSKLRVVVKLLHI 145
           LV PR A   H  +    ++A + RNII  K   +  K++  + L  I
Sbjct: 228 LVSPRIAHFNHLESLKGDLLANYSRNIIPQKYKDIPIKIKFDIALNQI 275


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 35 RAEFLQPGDPL 3
          R EFLQPGDPL
Sbjct: 31 RIEFLQPGDPL 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,609,396
Number of Sequences: 59808
Number of extensions: 98845
Number of successful extensions: 320
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)