Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0171
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    27   2.7  
Z66516-7|CAA91362.2|  494|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U81043-1|AAC47486.1|  494|Caenorhabditis elegans MEX-1 protein.        26   8.3  
AL023828-30|CAA19470.2|  494|Caenorhabditis elegans Hypothetical...    26   8.3  

>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 321 GRHPYRRVHRPDHDLR*ID*VRALATCRYPDHRGWILALRDS 196
           GR PY++V   D  +  +D +   ++C   +H G++ A RD+
Sbjct: 9   GRAPYQQVGDTDDPIIEVDQISFTSSCSSGEHEGYVTA-RDT 49


>Z66516-7|CAA91362.2|  494|Caenorhabditis elegans Hypothetical
           protein W03C9.7 protein.
          Length = 494

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 201 DSHLFHHGHHVYRH 160
           D+H +HH HH  RH
Sbjct: 334 DNHHYHHHHHQRRH 347


>U81043-1|AAC47486.1|  494|Caenorhabditis elegans MEX-1 protein.
          Length = 494

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 201 DSHLFHHGHHVYRH 160
           D+H +HH HH  RH
Sbjct: 334 DNHHYHHHHHQRRH 347


>AL023828-30|CAA19470.2|  494|Caenorhabditis elegans Hypothetical
           protein W03C9.7 protein.
          Length = 494

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 201 DSHLFHHGHHVYRH 160
           D+H +HH HH  RH
Sbjct: 334 DNHHYHHHHHQRRH 347


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,719,786
Number of Sequences: 27780
Number of extensions: 67371
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)