Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0169
         (337 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.37 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   1.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   2.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   2.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   6.0  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 302 SPRPSVATGLAPSTGKRPRSRRTWTG 225
           +P P+   G  P     PRS+R +TG
Sbjct: 262 APSPTAGAGGLPPQVPSPRSQRRYTG 287


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 20/76 (26%), Positives = 25/76 (32%)
 Frame = -2

Query: 324 PTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVLG 145
           PT    P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L 
Sbjct: 62  PTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLA 121

Query: 144 YIPVRSPLLRKSWLVS 97
            I   +     +W  +
Sbjct: 122 IITKMTLTQVSTWFAN 137



 Score = 20.2 bits (40), Expect = 6.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 114 SLVAASEQEYSPALNPVVLIDNG 182
           S+   S   YSP  NP  L D G
Sbjct: 24  SIGVESSAFYSPLSNPYALKDAG 46


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 337 LLKQPDSKERPSRRDPPSLRAWHPLRE 257
           L + P S++     DP ++  W P RE
Sbjct: 98  LSQAPASQQSLDASDPDAMGKWCPRRE 124


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 337 LLKQPDSKERPSRRDPPSLRAWHPLRE 257
           L + P S++     DP ++  W P RE
Sbjct: 254 LSQAPASQQSLDASDPDAMGKWCPRRE 280


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 269 PSTGKRPRSRR 237
           PS+G+ PR+RR
Sbjct: 203 PSSGRSPRTRR 213


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 233 WTGVVATRKRNLP 195
           WTG V  RK+  P
Sbjct: 237 WTGQVTVRKKRKP 249


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 181 PLSIKTTGFSAGLYS 137
           P+S++ TGFS   YS
Sbjct: 20  PVSVEPTGFSPKGYS 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,590
Number of Sequences: 336
Number of extensions: 1452
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)