Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0169
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   1.8  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   2.3  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   5.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   5.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   7.1  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    24   7.1  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   7.1  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    23   9.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   9.4  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
 Frame = -2

Query: 330 SNPTLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQ---- 163
           S+P L S+  + +L++         ++  +TNLD S R +     +  I    L +    
Sbjct: 131 SHPMLNSLGSSLSLKK---SVSRPPSSMSRTNLDVSSRWDNTADNDSQIDAQDLSRSTPS 187

Query: 162 --RDSVLGYIPVRSPLLRKSWLVSFPPLTNMLKFGGRS----LVPIPAARGSTSLERRHR 1
             R ++   +   + + +KS+  +  PL  + K    S     +P+P A GSTS+  R +
Sbjct: 188 PLRSAMENVLQSLNAMGKKSFSRANSPLLRLTKSTTTSKETDFIPVPPAHGSTSMTSRSK 247


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 284 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 177
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 337 LLKQPDSKERPS-RRDPPSLRAWHPLRENGP 248
           +   P S +  S  R+P S RA  P R+N P
Sbjct: 155 ITNDPQSSQSSSVSRNPASSRAGSPTRDNAP 185


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 209 KRNLPNTTSPVID*NNGIQCW 147
           +RN P+  +P+ D  N  Q W
Sbjct: 638 RRNAPDINNPIADFQNSFQNW 658


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 318 LRSVPLAATLRRYGPGTLYGK 256
           L  VP      RYG G LYGK
Sbjct: 705 LEHVPKFEPFIRYGAGQLYGK 725


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 253 GPVQDELGQXXXXXXXXXXXTPHLPLSIKTTGFSAGLYSCSLA 125
           G +++ L Q            PH+PLS +   F+   ++C++A
Sbjct: 2   GELKEILKQRYHELLDWNVKAPHVPLSQRLKHFTWSWFACTMA 44


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 302  SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNT 189
            +P PS A      +G  P +   + G+  T   N P+T
Sbjct: 1016 TPAPSSAFAFGNQSGTNPAAPAGFGGITNTATNNPPST 1053


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 153 VLGYIPVRSPLLRKSWLVSFPPLTNMLKFG 64
           +LGY P ++P  R+    ++  + N + FG
Sbjct: 218 LLGYFPKKTPSYREITTPAYSKIDNYIWFG 247


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -3

Query: 308 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 180
           S+ P PS +     +T     S  T T V  T   N   TT+P
Sbjct: 68  SIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,835
Number of Sequences: 5004
Number of extensions: 25188
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)