Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0169
         (337 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  27   2.9  
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                27   2.9  
SB_52726| Best HMM Match : Ammonium_transp (HMM E-Value=5.2e-12)       26   6.6  
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)                  26   8.7  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              26   8.7  
SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)                 26   8.7  
SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)                      26   8.7  
SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)                      26   8.7  

>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 243 KTNLDRSRRDEKAEPPEHHISRYRLKQRDSV-LGYIPVRSPLLRKSWLVSFPP 88
           KT    S      + P    +RYR++ RDSV   ++  R+P    S L++F P
Sbjct: 364 KTANATSSATNTTDLPRRRGTRYRIRARDSVDKSFVKFRNPNPSFSGLLTFEP 416


>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 1139

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 299 PRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 177
           P P   T +  +      +  T +G++++RKR  P TT+P+
Sbjct: 178 PAPITTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTPI 218


>SB_52726| Best HMM Match : Ammonium_transp (HMM E-Value=5.2e-12)
          Length = 511

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 159 DSVLGYIPVRSPLLRKSWLVSFPPLTNMLKFGGRSLVPIPAA 34
           D VL Y  VR P    + L+  P   N+L+F G   VP+P+A
Sbjct: 131 DRVLYYHGVRQPNPAHNHLL-LP--ANLLRFAGNGPVPLPSA 169


>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
          Length = 195

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 2   RWRRSKLVDPRAAGIGTRDLPPNLSILVSGGKETNQDFLSSGERTG 139
           R    K +    A +   D  P+ S+LVSG K++ Q       RTG
Sbjct: 144 RCMEEKTLRGHGADVKCIDWHPHKSLLVSGSKDSQQPIKLWDTRTG 189


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 186 ISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNMLKFGGRSLVPIP 40
           I  Y ++ RD  L +   ++PL RK+ L S+    +     G   +P+P
Sbjct: 251 IRSYSMRDRDYPLKHNKHQAPLERKASLPSYIAFQDKSSDDGHRKIPLP 299


>SB_47632| Best HMM Match : AAA_5 (HMM E-Value=0.00038)
          Length = 1172

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -2

Query: 210  KAEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNMLK 70
            K   P +H+++ +    +++L Y   R  +  + W++    L N+ K
Sbjct: 1002 KTPQPPYHVTKEQQDFENALLQYTRERGLVAHQPWIIKINQLRNLSK 1048


>SB_31883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 253 RFPVEGARPVATEGRGERDAP 315
           R PV G R + T+G G+  AP
Sbjct: 27  RLPVRGVRHLGTDGHGDYRAP 47


>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
          Length = 372

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 227 GVVATRKRNLPNTTSPVID*NNGIQCWAIFLFARRY*GNPG 105
           G +   K NLP+T   VI  + GI  W++    RR   N G
Sbjct: 98  GDIIIDKHNLPDTGENVIARHWGIDQWSMGYLCRRGQSNGG 138


>SB_701| Best HMM Match : RVT_1 (HMM E-Value=0.14)
          Length = 842

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 22  SGSPGCRNRHEGSPAEFKHISKRRKRN 102
           S SPG   RHE  P+      K++K+N
Sbjct: 599 SRSPGSPKRHESEPSGQTKSGKQKKKN 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,752
Number of Sequences: 59808
Number of extensions: 212804
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)