Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0168
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 35 0.065
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 30 1.8
09_04_0194 + 15504780-15506114 30 1.8
10_08_0294 + 16573326-16573634 29 2.4
12_02_0999 - 25134828-25135113,25135479-25135535,25136171-251362... 29 3.2
05_04_0374 - 20736615-20737037,20737148-20737639,20738145-207384... 29 3.2
05_05_0265 - 23680609-23681313 29 4.2
02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006 29 4.2
09_02_0237 + 6141048-6141962 28 5.6
06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143 28 5.6
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 28 5.6
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 7.4
08_02_0399 + 16742451-16742619,16743716-16744317 27 9.8
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 34.7 bits (76), Expect = 0.065
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIV-------GMTKEHLG 261
E + T +D GH+ Y+ + G + D G+L+I A G G T+EH+
Sbjct: 27 ETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGYERGGQTREHVL 84
Query: 262 LALALSV-PVFVVVTKID 312
LA L V + VV+ K+D
Sbjct: 85 LAKTLGVSKLVVVINKMD 102
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 277 SVPVFVVVTKIDMCPPNVLQDNLKLLIRILKSSGCRKVPVMVKSKDDVIVSATNFVSQR 453
SVP + P+ Q ++L LK GC ++P+ + S++D + F+ QR
Sbjct: 535 SVPAAPATHRKSTSGPSHAQSIIQLNPLPLKKHGCDRLPIQMCSEEDFLKDVMQFLIQR 593
>09_04_0194 + 15504780-15506114
Length = 444
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = -1
Query: 479 FETWNIGHSLCETKLVALTMTSSFDFTITGTFLHPDDLRILMSSLRLSCRTLGGHMS--- 309
F+ + +SL T L+ T S ++ I+ + DD + +++ L T +S
Sbjct: 243 FDGMDHSNSLLYTPLITRTTDRSSEYFISLKRVVVDDRAVPLNATLLDVGTKLSTVSPYT 302
Query: 308 ILVTTTNTGTDKARASPRCSLVIPTIPALAP 216
+L T+ + +A A+ + IP +PA+AP
Sbjct: 303 VLETSIHEAVTRAFAASMATAGIPRVPAVAP 333
>10_08_0294 + 16573326-16573634
Length = 102
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 372 IGVQEGSGDGEVEGRCHCQRHQLRFAKAVPNIPSFEREWG 491
+G +EG +GEV GR C R L +A+A I R+WG
Sbjct: 50 VGGKEGMAEGEVRGR-RC-REPLSWARAASGIE--RRQWG 85
>12_02_0999 -
25134828-25135113,25135479-25135535,25136171-25136296,
25136399-25137289,25137379-25137533
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 381 QEGSGDGEVEGRCHC-QRHQLRFAKAVPNIPSFERE 485
++GSG GRCHC +R +LR +++ +P+ +
Sbjct: 331 EDGSGKCATTGRCHCSKRRKLRIKRSI-KVPAISNK 365
>05_04_0374 -
20736615-20737037,20737148-20737639,20738145-20738422,
20738576-20738732
Length = 449
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 13 SVGNDILGFDNMGNVVNKPDHGTLDWVKICEKSSKVIT 126
S+G++++ DN NVVN D ++ + + E+ S+ +T
Sbjct: 262 SIGDEVVSVDNCSNVVNNADSPVIEGL-VLEELSRFLT 298
>05_05_0265 - 23680609-23681313
Length = 234
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -1
Query: 650 PARTTPASAVPDTTVPTPGTEYVSSIWNSAGLSSCEGILVFNRFRNIV 507
PA +V T G + V ++W + L +C G VF+ ++V
Sbjct: 22 PAAMAAGDSVMKTKAAAAGGDVVLTVWRKSLLFNCRGFTVFDASGDLV 69
>02_05_0760 + 31548272-31548508,31548746-31548787,31548837-31550006
Length = 482
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 265 ALALSVPVFVVVTKIDMCPPNVLQDNLKLLIRILKSSGCRKVPVMVKSKDDVIVS 429
ALA ++ F + ID C PN++ N+ LL ++ +++ ++ K D+ VS
Sbjct: 162 ALAKALGYFEKMKTIDRCQPNIVTYNI-LLRAFAQAGDTKQLDILFKDLDESPVS 215
>09_02_0237 + 6141048-6141962
Length = 304
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 263 SLLPCQCQYSLSSPRLTCARLTFCKTIXXXXXXXXXHRGA 382
S++ C C S +P T FCK HRG+
Sbjct: 103 SVVKCSCSSSAMAPSATTTSFLFCKICMDDVPASDAHRGS 142
>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
Length = 339
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 78 HS*LGEDLREVFQSDNVYRPSWTREVPQNYGLWDDGTRSRLWDAHDRSQRGYSRNDQG 251
H L DL+ + Q N+ RP +VP ++GL D LW D+ G+ ND+G
Sbjct: 187 HGGLSPDLKNMDQIRNIARPV---DVP-DHGLLCD----LLWSDPDKEIEGWGENDRG 236
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 450 LRNEVGGADNDIVLRLHHHRNLPAPR*LEDPD 355
LR+ VG + + HHHR LP P+ + PD
Sbjct: 7 LRSSVGSHSSALPPSYHHHRRLPPPQ-QQHPD 37
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 266 ASPRCSLVIPTIPALAPIMSIPKSGACPVIPKTV 165
A P + V+P P P SIP S + P++P V
Sbjct: 28 APPSAAAVLPARPPSPPRASIPVSSSPPLLPPPV 61
>08_02_0399 + 16742451-16742619,16743716-16744317
Length = 256
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 644 RTTPASAVPDTTVPTPGTEYVSSIW 570
R +P AVP VP+ GT ++S+W
Sbjct: 115 RPSPRFAVPVLAVPSVGTSRLASLW 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,687
Number of Sequences: 37544
Number of extensions: 402638
Number of successful extensions: 1268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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