Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0168
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)            166   1e-41
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                 121   4e-28
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   3e-21
SB_40217| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               44   1e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_11166| Best HMM Match : CARD (HMM E-Value=0.001)                    34   0.12 
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              33   0.27 
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)                29   3.3  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   4.3  
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)                   29   4.3  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           28   5.7  
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81)           28   5.7  

>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score =  166 bits (404), Expect = 1e-41
 Identities = 77/131 (58%), Positives = 97/131 (74%)
 Frame = +1

Query: 253 HLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLLIRILKSSGCRKVPVMVKSKDDVIVSA 432
           HLGLALAL+VPVFVVVTKIDMCPPNVLQ+ +KLL RILKS GCRK+PV+V++KDDV+VSA
Sbjct: 2   HLGLALALNVPVFVVVTKIDMCPPNVLQETMKLLARILKSPGCRKIPVVVQNKDDVVVSA 61

Query: 433 TNFVSQRLCPIFQVSNVSGXXXXXXXXXXXXXKTRMPSHEDKPAEFQIDDTYXXXXXXXX 612
           TNF+S+R+CPIFQVSNV+G               R+ S +++P+EFQIDDTY        
Sbjct: 62  TNFISERVCPIFQVSNVTGENLDLLKMFLNLLSVRVESKDEEPSEFQIDDTYSVPGVGTV 121

Query: 613 XXXXALAGVVR 645
                + G++R
Sbjct: 122 ISGTCMKGIIR 132


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score =  121 bits (292), Expect = 4e-28
 Identities = 57/72 (79%), Positives = 62/72 (86%), Gaps = 2/72 (2%)
 Frame = +1

Query: 4   RGSSVGNDILGFDNMGNVVNKPD-HGT-LDWVKICEKSSKVITFIDLAGHERYLKTTVFG 177
           R SSVGNDILGFDN G VVNK + HG  +DW KIC++SSKVITFIDLAGHERYLKTT+FG
Sbjct: 276 RTSSVGNDILGFDNTGQVVNKAEQHGANVDWAKICKESSKVITFIDLAGHERYLKTTIFG 335

Query: 178 MTGHAPDFGMLM 213
           MTGH PDF MLM
Sbjct: 336 MTGHVPDFAMLM 347


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 45/78 (57%), Positives = 60/78 (76%)
 Frame = +1

Query: 4   RGSSVGNDILGFDNMGNVVNKPDHGTLDWVKICEKSSKVITFIDLAGHERYLKTTVFGMT 183
           R SS+ ++ILGF   G VVN  D  + +   +CE+SSK+ITFIDLAGH +Y+KTT+FG+T
Sbjct: 159 RTSSISHEILGFSCTGEVVNYSDGRSAE--DVCEQSSKLITFIDLAGHHKYMKTTIFGLT 216

Query: 184 GHAPDFGMLMIGANAGIV 237
           GH+PD+ ML+I  NAGIV
Sbjct: 217 GHSPDYAMLVIAGNAGIV 234


>SB_40217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/73 (49%), Positives = 50/73 (68%)
 Frame = +1

Query: 238 GMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLLIRILKSSGCRKVPVMVKSKDD 417
           G TKEHLGLA+AL VP  +++TK D+C P +LQ   +L+ RIL+S  C KVP+ V +++D
Sbjct: 2   GTTKEHLGLAMALKVPTLIIITKTDICTPAMLQRTTRLVERILQSPACNKVPIRVLAEED 61

Query: 418 VIVSATNFVSQRL 456
              +A NF S  L
Sbjct: 62  AEDAAENFASGHL 74


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = +1

Query: 121 ITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVV 300
           I F+D  GHE +  T +        D  ++++ A+  ++  TKE +  A A  VP+   +
Sbjct: 140 IAFLDTPGHEAF--TAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAI 197

Query: 301 TKIDMCPPNVLQDNLK 348
            KID   PN   DN+K
Sbjct: 198 NKID--KPNANPDNIK 211


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +1

Query: 109 SSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPV 288
           S + ITFID  GH  +      G   +  D  +L++ A+ G+   T E +  A+   VP+
Sbjct: 74  SGEKITFIDTPGHAAFNSMRARG--ANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVPL 131

Query: 289 FVVVTKIDMCPPNV 330
            V + KID    N+
Sbjct: 132 IVAINKIDKPKKNL 145


>SB_11166| Best HMM Match : CARD (HMM E-Value=0.001)
          Length = 720

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = -1

Query: 524 RFRNIVNSSRFSPLTFETWNIGHSLCETKLVALTMTSSFDFTITGTFLHPDDLR--ILMS 351
           R RN  ++   S +     + GH +C   L   T+  + +  +  T + PD  +  ++  
Sbjct: 277 RIRNCKSAKLNSKVNQFVKDCGHDVCFVYLAGHTVQLNGENYLLPTDIKPDCTQADLIQQ 336

Query: 350 SLRLSCRTLGGHMSILVTTTNTGTDKARASPRCSLVIPTIPALAP 216
           SL ++   L  HMS L+     G+       RC  ++P + A+ P
Sbjct: 337 SLNINKLILQLHMSPLLIVIVDGSHHIEGKFRCPGILPGLSAIPP 381


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +1

Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIV-------GMTKEHLG 261
           +  +KVIT +D  GH+ ++   + G      D  +L++ A  G         G T+EH  
Sbjct: 9   QTKNKVITLMDAPGHKDFIPNMITGAA--QADVAILVVDAITGEFEAGFESGGQTREHAI 66

Query: 262 LALALSV-PVFVVVTKIDM 315
           L  +L V  + V + K+DM
Sbjct: 67  LVRSLGVTQLIVAINKLDM 85


>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
          Length = 882

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 485 LTFETWNIGHSLCETKLVALTMTSSFDFTITGTFLHPDDLRILMSS 348
           + F TW+ G  +C+++   + M S++DF   G    P D  + M S
Sbjct: 100 IKFSTWDFGGQVCQSRDHRVQMFSTWDF--GGQVFQPRDYHVHMLS 143


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 90   GEDLREVFQSDNVYRPSWTREVPQNYGLWDDGTRSRL-WDAHDRSQRGYSRND 245
            G   R+ ++  N     +TR+     G + D  +S   W+ +D S+  YSR++
Sbjct: 853  GNASRDSYKDGNASPRRYTRDESTEDGYYPDDRKSNYRWNGNDMSRNDYSRHE 905


>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
          Length = 599

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 404 FTITGTFLHPDDLRILMSSLRLSCRTLGGHMSILVTTTNTGTDKARASPRCSLVIPTIPA 225
           F+ + T   P+ +    S   +SC T G H+   +   N+G  KA  S  CS  +   P+
Sbjct: 274 FSASSTTQGPEAVNFESSPRDISCETPGNHVRPAL-IGNSGLSKAGPS-NCSCDMNASPS 331

Query: 224 LAPIMSIPKSGACPV 180
                S+P S +  +
Sbjct: 332 ALSASSLPASASSAI 346


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 650 PARTTPASAVPDTTVPTPGT 591
           P +TTP  A P  T PTP T
Sbjct: 64  PTQTTPTPATPTPTTPTPKT 83



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 650 PARTTPASAVPDTTVPTPGT 591
           P+ TTP S  P  T PTP T
Sbjct: 39  PSPTTPTSTAPTQTTPTPTT 58


>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 401 TITGTFLHPDDLRILMSSLRL-SCRTLGGHMSILVTTTNTGTDKARASPRC 252
           T+ G  LH   LR++ SSL + SC+ +G    I VT        A ++  C
Sbjct: 338 TLIGLVLHDSALRVVDSSLVIDSCQVMGRKQLINVTQDTQSVQIAISNSTC 388


>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 274  RQERARGVPWSFLLYPRWLRS*ASQSRERVP 182
            ++ RA  +PW  +    WLRS  +Q++ R P
Sbjct: 1005 QETRASAMPWDAIHSELWLRSQGTQTKRRSP 1035


>SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81)
          Length = 597

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 647 ARTTPASAVPDTTV-PTPGTEYVSSIWNSAGLSSCEGILVFNRFRNIVNSSRFSPLTFE 474
           +RT  AS VP  T  P P +   S+ +N    S    I       +   SS FSP T E
Sbjct: 6   SRTISASFVPSNTFNPLPASSVPSNTFNPLPASFVPSITFSPLSSSSTPSSTFSPFTIE 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,420,443
Number of Sequences: 59808
Number of extensions: 438846
Number of successful extensions: 1574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)